RetrogeneDB ID:
retro_ecab_402
Organism:
Horse ( Equus_caballus )
Location:
17:67288131-67288638 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
63.19 %
Coverage:
75.32 %
Frameshifts:
5
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_402
CAAACATCTATGCAACTGTTTAAGCTGGCCCACAAGTGCAGCCCAGAGATAAAGCAAGAA
AAGCAGAAGCTGTTGTCTGAGGCTAGAAGAAAGCTGCCTGCAAAGGGGACGTCCCCACTG
AGACCACCTGTGCTTTGAGCAGGTATTAATACTGCCACCACCTTGTGGAGAGTCAGAAGG
CAATTGCACACACATGGATCCCAATGAGCGAGTCCTCCTGCCTGCCTTGTGCTGTAACAT
GGGAGTTCCCTAGTTCACTATCAAGGGAAAAGCCACGCCTGGATATCTTGTCCACGGAAA
GACCAGCACCAACCATCACCTTCACACAGGTTAACTGGGAAGAAAAAGGAACTCTGACTA
AGCTGGTGGAAGCTGTCAGGACCCGTTGCAATGGCAGATATAATAAGATCCACCATCATT
GGGAGGCAACATCAGAGGTCCAAAATCCGTGGCTCTCATTGCCAAGCTGGAAATGCAAAG
GCTAAAGAACTTGCTACCAAACTTGGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.58
SRP021940_cerebellum 0.1
SRP021940_embryo 0.24
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.16
SRP021940_testis 1.36

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTL-VENKKAQLVVIAHD-VDPIELVVFLPALCRKMGVPYCIIKGK
QT..QL.KLAHK..PE.KQEK.Q.LL..A..K...KG..P..RPPVL.AG.NT.TTL.VE..KA....IAH...DP.E.V..LPALC..MGVP...IKGK
Retrocopy
QTSMQLFKLAHKCSPEIKQEK-QKLLSEARRKLPAKGTSPL-RPPVL*AGINTATTL/VESQKA----IAHT/MDPNERVL-LPALCCNMGVP*FTIKGK


Parental protein
ARLGRLVHRKTCT-TVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHW-GGNVLGPKSVARIAKLE-KAKAKELATKLG
A..G.LVH.KT.T.T..FTQVN.E.KG.L.KLVEA.RT..N.RY..I..HW.GGN..GPKSVA.IAKLE..AKAKELATKLG
Retrocopy
ATPGYLVHGKTST\TITFTQVNWEEKGTLTKLVEAVRTRCNGRYNKIHHHW/GGNIRGPKSVALIAKLE/NAKAKELATKLG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide