RetrogeneDB ID:
retro_ecab_403
Organism:
Horse ( Equus_caballus )
Location:
17:737192-738400 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
95.79 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
PEX13
Parental gene aliases:
No gene alias available
Parental gene description:
peroxisomal biogenesis factor 13 [Source:HGNC Symbol;Acc:8855]

Genomic region (view in browser)





>retro_ecab_403
ATGGCATCCCAGCCGCCACAGCCCCCGATACCCGGGGAGACCCACCGAATTCCGGGGGCT
GGTCCGGGACCAGGACCCGGCCCCACTTTCCAATCTGCTGATTTGGGTCCTACTTTATTG
ACAAGACCTGGACAACCAACACTTACCAGAGTGCCGCCACCTATTCTTCCAAGGCCATCA
CAGCAGACAGGAAGCAGCAGTGTGAACACTTTTAGACCTACTTACAGTTCATTTTCTTCT
GGATATGGTGCCTATGGAAATTCATTTTATGGAAGCTATAGCCCTTATAGTTATGGATAT
AATGGGTTGGGCTATAACCGCATCCGTGTGGATGATCTTCCACCTAGTAGATTTGTTCAG
CAAGCTGAAGAAAGCAGCAGAGGTGCATTTCACTCCATTGAAAGTATTGTGCATGCATTT
GCCTCTGTCAGTATGATGATGGATGCTACCTTTCCAGCTGTCTATAACAGTTTCAGGGCT
GTATTGCATGTAGCAAATCACTTTTCCCGATTAAAAATACACTTCACAAAGGTCTTTTCA
GCTTTTGCATTAGTTGGGACTATAAGGTATCTTTATAGACGGTTACAGCAGATGATAGGT
TTAAGAGGAGGCTCTGAGAATGAGGACTTATGGGCAGAAAGTGAAGGAACTGTGGCTTGC
CTTGGTGCCGAGGACAGAGCAGCTAATTCAGCAAAATCTTGGCCAATATTCTTATTCTTT
GCTGTTATCCTTGGTGGTCCTTATCTCATCTGGAAACTGCTGTCTATCCACACTGATGAA
GTAACAGACAACACCAACTGGGCAAGTGGTGAGGATGACCATGTAGTTGCTAGGGCAGAA
TATGATTTTACTGCTGCATCTGAAGAAGAAATTTCTTTCCGTGCTGGTGATATGCTACAT
TTAGCTCTCAAAGAACAGCAACCCAAGTGCGTGGTTGGCTTCTGGCTAGTCTTGATGGTC
AAACAACAGGACTTATACCTGCTAATTATGTCAAAATTCTTGGTAAAAGAAGAGGTAGAA
AAACAGTGGAATCCAGTAAAATTCCCAAGCAGCAACAATCTTTTACCAACACAACACTAA
TTAAAGGAGTCACGGCCACTGATTCTTTGGATGAACAGGAAGCTGCCTTTGAATCTGTTT
TTGTTGAAACTTGTAAGGTTCCAGTTGCACCTGATTCCACTGGGAAAAGTGGAGATAAAC
AAGTTCTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.12

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MASQPPPPPKPWETRRIPGAGPGPGPGPTFQSADLGPTLLTRPGQPTLTRVPPPILPRPSQQTGSSSVNTFRPAYSSFSSGYGAYGNSFYGSYSPYSYGY
MASQPP.PP.P.ET.RIPGAGPGPGPGPTFQSADLGPTLLTRPGQPTLTRVPPPILPRPSQQTGSSSVNTFRP.YSSFSSGYGAYGNSFYGSYSPYSYGY
Retrocopy
MASQPPQPPIPGETHRIPGAGPGPGPGPTFQSADLGPTLLTRPGQPTLTRVPPPILPRPSQQTGSSSVNTFRPTYSSFSSGYGAYGNSFYGSYSPYSYGY


Parental protein
NGLGYNRLRLDDLPPSRFVQQAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFSAFALVRTIRYLYRRLQRMIG
NGLGYNR.R.DDLPPSRFVQQAEESSRGAF.SIESIVHAFASVSMMMDATF.AVYNSFRAVL.VANHFSRLKIHFTKVFSAFALV.TIRYLYRRLQ.MIG
Retrocopy
NGLGYNRIRVDDLPPSRFVQQAEESSRGAFHSIESIVHAFASVSMMMDATFPAVYNSFRAVLHVANHFSRLKIHFTKVFSAFALVGTIRYLYRRLQQMIG


Parental protein
LRGGSENEDLWAESEGTVACLGAEDRAANSAKSWPIFLFFAVILGGPYLIWKLLSTHTDEVTDNTNWASGEDDHVVARAEYDFTAASEEEISFRAGDMLH
LRGGSENEDLWAESEGTVACLGAEDRAANSAKSWPIFLFFAVILGGPYLIWKLLS.HTDEVTDNTNWASGEDDHVVARAEYDFTAASEEEISFRAGDMLH
Retrocopy
LRGGSENEDLWAESEGTVACLGAEDRAANSAKSWPIFLFFAVILGGPYLIWKLLSIHTDEVTDNTNWASGEDDHVVARAEYDFTAASEEEISFRAGDMLH


Parental protein
LALKEQQPK-VRGWLLASLDGQTTGLIPANYVKILGKRRGRKTVESSKIPKQQQSFTNTTLIKGATAADSLDEQEAAFESVFVETCKVPVAPDSTGKSGD
LALKEQQPK.VRGWLLASLDGQTTGLIPANYVKILGKRRGRKTVESSKIPKQQQSFTNTTLIKG.TA.DSLDEQEAAFESVFVETCKVPVAPDSTGKSGD
Retrocopy
LALKEQQPK/VRGWLLASLDGQTTGLIPANYVKILGKRRGRKTVESSKIPKQQQSFTNTTLIKGVTATDSLDEQEAAFESVFVETCKVPVAPDSTGKSGD


Parental protein
KQDL
KQ.L
Retrocopy
KQVL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide