RetrogeneDB ID:
retro_ecab_404
Organism:
Horse ( Equus_caballus )
Location:
17:2767903-2768311 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.45 %
Coverage:
60.79 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
NME2
Parental gene aliases:
No gene alias available
Parental gene description:
nucleoside diphosphate kinase B [Source:RefSeq peptide;Acc:NP_001191672]

Genomic region (view in browser)





>retro_ecab_404
CAGCAGGAGCAGACCATGGCCAACAGTGAGGGTATCTTCATTGCCAGTAAGTTTGATCAG
GTCCAGGGGCGCCTCATGGGAGAGATTCTCAAGCATTTTCAGCAGAAGGATTCCAACTTA
TTGGTTTGAAATTCATGCAGGCTTCTGAAGATGTTCTCAAGCAACACTACGTCATCCTGA
AGGATGGTCTGTTTTTTGCCAACCTGGTCAAAGACATGTACACAGGGCCAGTGGTTGTCA
TGAGATGAGAGGGGCTGAATGTTGTGAAGACATGCTGGATCATGCTAAGGGAAACCTATC
TGTGGGCTTTAAGCTTAGGACCATCTTTAGGGATGTTTGCATTCAAGTAGACAGGAACAT
TATTTATGGCAGCAATTCCTGCAGAGCGCAGAGAAGACTGGCTTGTGG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QVGRTMANVERTFIAIKPDGVQRSLVGEIIKRFEQK-GFRLVAMKLLQASEDLLKQHYVDLKDRPFFPGLVKYMHSGPIVAMVWEGLNVVKTGRVMLGET
Q...TMAN.E..FIA.K.D.VQ..L.GEI.K.F.QK.GF.L...K..QASED.LKQHYV.LKD..FF..LVK.M..GP.V.M..EGLNVVKT...ML.ET
Retrocopy
QQEQTMANSEGIFIASKFDQVQGRLMGEILKHFQQK/GFQLIGLKFMQASEDVLKQHYVILKDGLFFANLVKDMYTGPVVVMR*EGLNVVKTCWIMLRET


Parental protein
NPADSKPGTIRGDF-CIQVGRNIIHGSDS-VKSAEKEISLW
.......G...G.F.CIQV.RNII.GS.S...SAEK...LW
Retrocopy
YLWALSLGPSLGMF/CIQVDRNIIYGSNS/LQSAEK-TGLW


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide