RetrogeneDB ID:
retro_ecab_405
Organism:
Horse ( Equus_caballus )
Location:
17:9735184-9735759 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
81.35 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
1
Parental gene:
Parental gene symbol:
RPL9
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L9 [Source:HGNC Symbol;Acc:10369]
Genomic region (view in browser)
>retro_ecab_405
ATGAAGACCATTCTCAGCAATCAGACTGTTGACATTTCAGAATATGTCAACATCTCTCTG
AAGGGACGCACAGTTATTGTGAAGGGCCCAAAGGAACACTGTGGAGGGACTTCAGTCACA
TCAATGTAGAACTCAGTCTCCGCGGGAAGAAAAAGAGGAGGCTCCGGGCTGATAAATGCT
GGGGAAATAGAAAGGAACTGGCTGATGCGGGCACTATCTTCAGTCACGTACAGAATGTGA
GGAAGGGTGTTACACGGGGCTTCCGTTACAAGCTGAGGTCTGTGTGTGCTCACTTCCCTA
TCAACGTGGTTATTCAGGAGAATGGGTCTCTTGTTGAGATCCGAAATTTCTTGGGTGAAA
AATACATCCGCAGGGTTCAGCTGAGGCCTGGGATTGCCTGTTCAGTATCTCAAGCCTAGA
AAGATGAGTTAATTCTTGAAGGAAACGACATTGAACTTGTTTCAGATTCAGCTGCTTTGA
CTGAGCATGCCACAACAGTTAAAAACAAGGATAGCAGAACATTTCTGGATGTTATCTATG
TTTCTGAGACAGAAACAGTTCAGCGGGTGGATGAA
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.06 |
| SRP021940_cerebellum | 0.15 |
| SRP021940_embryo | 0.12 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.08 |
| SRP021940_testis | 0.06 |
Parental protein coverage
Changes in the retrocopy sequence
