RetrogeneDB ID:
retro_ecab_406
Organism:
Horse ( Equus_caballus )
Location:
17:10133507-10133848 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.71 %
Coverage:
100.0 %
Frameshifts:
4
Stop codons:
1


Parental gene:
Parental gene symbol:
RPL30
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L30 [Source:HGNC Symbol;Acc:10333]

Genomic region (view in browser)





>retro_ecab_406
ATAGTGGCCAAAAAGAAGAGGCAAAAGTTGCTAGAGTCCATCAACTCTAGGCCCCAACTG
ATTATGAACAGCGGAAAGTCGATGCTTGGTACAAGCCACCTCTGAAGATGATACTCAAAG
CAAAGCAAAACTGGTCATCCTTGCCAAAACCGCCCGACGGCGAGGAAATCTGAAATAGAG
TCCTATGCCACGTCGGCCCAAACCGGTGTCCAGCACTACAGGGCAATAACATTGAACCGG
GCACAGCACGCAGGAAAGACGACAGAGTATGCACACTGGCTGTCATTGGTCCAGGTGGTT
CTGTGACCTTTAGAAGTGTGCCAGAATAGACTGGTAAAAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.13
SRP021940_synovial_membrane 0.52
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVAAKKTKKSLESINSRLQLVMKSGKYVLG-YKQTLKMI-RQGKAKLVILAN-NCPALRKSEIEYYAMLAKTGVHHY-SGNNIELGTACGKYYRVCTLAI
.VA.KK..K.LESINSR.QL.M.SGK..LG.YK..LKMI..Q.KAKLVILA..N.P..RKSEIE.YA..A.TGV.HY..GNNIE.GTA..K..RVCTLA.
Retrocopy
IVAKKKRQKLLESINSRPQLIMNSGKSMLG/YKPPLKMI/TQSKAKLVILAK/NRPTARKSEIESYATSAQTGVQHY/QGNNIEPGTARRKDDRVCTLAV


Parental protein
IDPGDSDIIRSMPEQTGEK
I.PG.S...RS.PE.TG.K
Retrocopy
IGPGGSVTFRSVPE*TGKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide