RetrogeneDB ID:
retro_ecab_407
Organism:
Horse ( Equus_caballus )
Location:
17:12885851-12886189 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
54.39 %
Coverage:
63.28 %
Frameshifts:
1
Stop codons:
5


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_407
GAGAGCATGAACATCAGAATGGATCAAGGAGAAGAAAGAATCTGTGAGTTTGAAGACAGG
AACTTGAAAATTATCTAGTCAGAGGAGAACAAAGAATAGGGATTGAAACAGAGTAAAGAA
AGCCTACATGATCTATGAGATACCATTCAAAGAACCAATTTGTGAATATTTGGTGTTCCA
GAAAGAGAAGAGAGGGGACAGGGAGAAGAAAGCTTATTTAAAGAAATAATGGTTCAGAAG
TTCCCAAATCTGGGGAAAGATTTGAATATCTAAGTTCATGAAGCTCACAGATCACCAAAT
AAACCCAACTTAAAGAGATCCTCTCTAGACACATTATA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ESINNRMDQAEET-CELEDRTFEIIQSEENKEKRMKKIKDSLLEKYLTIRKSNIRIIGIPEGEEKQKDTESLFKEIIAENFPNLGKKLDLQVHEANRTPN
ES.N.RMDQ.EE..CE.EDR...II.SEENKE...K..K.SL.....TI...N..I.G.PE.EE.....ESLFKEI....FPNLGK.L...VHEA.R.PN
Retrocopy
ESMNIRMDQGEERICEFEDRNLKII*SEENKE*GLKQSKESLHDL*DTIQRTNL*IFGVPEREERGQGEESLFKEIMVQKFPNLGKDLNI*VHEAHRSPN


Parental protein
YIKAKRPS-PRHIV
....KR.S..RHI.
Retrocopy
KPNLKRSS/SRHII


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide