RetrogeneDB ID:
retro_ecab_408
Organism:
Horse ( Equus_caballus )
Location:
17:17151251-17151746 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.69 %
Coverage:
64.84 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
PRDX3
Parental gene aliases:
No gene alias available
Parental gene description:
peroxiredoxin 3 [Source:HGNC Symbol;Acc:9354]

Genomic region (view in browser)





>retro_ecab_408
TTGACAAACATATAGTGATCTTGTTCTGGTCAAGCAAAATTTACCTTTAGCACCAGTTCC
TCAGATCATGCTCCTGCTGTCAGCCAGTGTGGACCCTCTTTTAGTGGAATAGCTGATGTC
AATGGAGAATTCAAAGAACTAAGCTTTCATGACTTTAAGGGGAAATATTTGGTGCTTTTC
TTTTATCCTTTGGATTTCACCTTTATGTGTCCTACAGAAATTGTTGCCTTTGGTGATTAA
GCCAATGAGTTTCATGATGTGAACTGTGAAGTTGTTGTAGTTTTGGTGAGTTCTTTCTTT
GCCATCTTGACTGATAAATATACAAAGGAAGAAAGGCAGTTTGGGCCACAAGAACATTGC
AGTCTTGTCAGATCTGACTAAACAAAAATTTCCTGAGACTACAGTGTGCTGTCCCTGAGA
GGTCTTGCACTAAGAGGTCTCTTCATGACTGACCCCAGTGGAGATATGAAGCATTCGAGT
ATGAATATCCTCCCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LTNVLWSGFNQAKLAFSTSSSYHTPAVTQHAPYFKGTAVVKGEFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHF
LTN...S...QAK..FSTSSS.H.PAV.Q..P.F.G.A.V.GEFKELS..DFKGKYLVLFFYPLDFTF.CPTEIVAF.D.ANEFHDVNCE.V.V...S.F
Retrocopy
LTNI**SCSGQAKFTFSTSSSDHAPAVSQCGPSFSGIADVNGEFKELSFHDFKGKYLVLFFYPLDFTFMCPTEIVAFGD*ANEFHDVNCE-VVVVLVSSF


Parental protein
SHLAW-INTPRKNGGLGHMNIPLLSDLTKQISRDYGV-LLEGAGLALRGLFIIDPNGVIKHLSVNDLP
......IN..RK.G.LGH.NI..LSDLTKQ......V..L...GLALRGLF..DP.G..KH.S.N.LP
Retrocopy
FAILT\INIQRKKGSLGHKNIAVLSDLTKQKFPETTV/VLSLRGLALRGLFMTDPSGDMKHSSMNILP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide