RetrogeneDB ID:
retro_ecab_409
Organism:
Horse ( Equus_caballus )
Location:
17:20099380-20099939 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.06 %
Coverage:
100.0 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
SLMO2
Parental gene aliases:
No gene alias available
Parental gene description:
slowmo homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:15892]

Genomic region (view in browser)





>retro_ecab_409
CATGTCTTTTACCACCCATGGGGAACCATTCCAACAGCTGCAATGCAGACATACCCAAAC
CCTGTGAACCCAAGTGTGCTTTGGGTTGATGTATTGAACAGACATATAGATCCCTTTGGA
AAACTGCATTGCCATAGATTTCTCAGCACAGAACGGAACTGCCTTCCGTTGGGAATTCCT
TCCACTTATTGGTGCAGTAAGAACCAAAACACATACTCAAGAACATTCTGTAGTTGATCC
TGTAGAGAAAATAATGAAACTTAAATCTACTAATTCATTTATAAAGACAGTTTCAGTATA
TAAGAGACATATACAAACCACATCCTCAAGACCCAGGAAAAATTATTTTGACTCAAGAAG
TCATAACGACTGTGAAAGGAGTCAGTCTCAGCAGTTACGCAGAAGGACTAGGGGCAAGTA
CAATATCTTCCAATGCTAATAAAGACTGACATGCAACAGAACGGGCAATACATAAATTAA
ATGCCGAGACTGAAGAGTTGATGGCTTCAGCAAGAGGAAGATGAAGACACCTATGGCAGC
GGCAGCATTTGTAGAGAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
HVGSHPWETVTTAAMQKYPNPMNPSVVGVDVLDRHVDPSGKLHSHRLLSTEWG-LPSIVKS-LIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVS
HV..HPW.T..TAAMQ.YPNP.NPSV..VDVL.RH.DP.GKLH.HR.LSTE...LP....S.LIGA.RTKT..QEHSVVDPVEK.M.LKSTN.SF...VS
Retrocopy
HVFYHPWGTIPTAAMQTYPNPVNPSVLWVDVLNRHIDPFGKLHCHRFLSTERNCLPLGIPS\LIGAVRTKTHTQEHSVVDPVEKIMKLKSTN-SFIKTVS


Parental protein
VDERLIYKPHPQDPEKT-VLTQEAIITVKGVSLSSYLEGLMASTISSNANKGREAMEWVIHKLNAEIEELTASARG-SIRTPMAAAAFVEK
V..R.I.......P.K...LTQE.I.TVKGVSLSSY.EGL.ASTISSNANK...A.E..IHKLNAE.EEL.ASARG....TPMAAAAFVEK
Retrocopy
VYKRHIQTTSSR-PRKN\ILTQEVITTVKGVSLSSYAEGLGASTISSNANKD*HATERAIHKLNAETEELMASARG/KMKTPMAAAAFVEK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide