RetrogeneDB ID:
retro_ecab_410
Organism:
Horse ( Equus_caballus )
Location:
17:21621657-21621882 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
84.0 %
Coverage:
98.68 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
SNRPG
Parental gene aliases:
No gene alias available
Parental gene description:
small nuclear ribonucleoprotein polypeptide G [Source:HGNC Symbol;Acc:11163]

Genomic region (view in browser)





>retro_ecab_410
ATGAGTAAAGCTCACTGGCCCAAATTGAAAAAATGTATGGACAAGAAGTTATCATTGAAA
TTAAATGGTGGCAGACATGTCCAAGGAATATTGCTGGGATGTGATCCCTTTATGAATCTG
GTGATAGATGAATGTGTGGAGATGGCAGCTGGTGGGCAACAGAACAATGTTGGCATGGTG
GTAATAGGAGGAAATTGTATCATCATGTTGGAAGACTTGGAAAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.15
SRP021940_embryo 0.14
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALER
MSKAH.P.LKK.MDKKLSLKLNGGRHVQGIL.G.DPFMNLVIDECVEMA..GQQNN.GMVVI.GN.IIMLE.LE.
Retrocopy
MSKAHWPKLKKCMDKKLSLKLNGGRHVQGILLGCDPFMNLVIDECVEMAAGGQQNNVGMVVIGGNCIIMLEDLEK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide