RetrogeneDB ID:
retro_ecab_411
Organism:
Horse ( Equus_caballus )
Location:
17:21694600-21694900 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.61 %
Coverage:
95.19 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
RPL37
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L37 [Source:HGNC Symbol;Acc:10347]

Genomic region (view in browser)





>retro_ecab_411
CAGAAGCGAGATGAGGAAGAGAACATCATCATTTGGGAAGCGGCACAATACGAAGCACAC
AGGGTGCCACTGTTGTGGCTCAAAGGCCTACCGCCTTCACAAGGCGACCTGTAGCATATG
TGGCTACCCTGCCAAGCCCAAGAGAAAGTATAACTGGAGTGCCAAGGCTAAAAGATGAAA
TACCACTGGGACCAATCGAACAAGGCCCCTAAAAATTATACACTGCAGATTCAGGCATGG
ATCCCCTGAAGAACAACACCCAAACCCAAGAGGGCAGCTGTTGCAGCATCTAGTTCATCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QKRD-DEGNVIVRKA-NKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFRE-GTTPKPKRAAVAASS
QKRD..E...I...A.N..HT.C..CGSKAY.L.K.TC..CGYPAK.KRKYNWSAKAKR.NTTGT.R.R.LKI...RFRHG..E..TTPKPKRAAVAASS
Retrocopy
QKRDEEENIIIWEAA\NTKHTGCHCCGSKAYRLHKATCSICGYPAKPKRKYNWSAKAKR*NTTGTNRTRPLKIIHCRFRHGSPE/RTTPKPKRAAVAASS


Parental protein
SS
SS
Retrocopy
SS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide