RetrogeneDB ID:
retro_ecab_412
Organism:
Horse ( Equus_caballus )
Location:
17:31700494-31700827 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
83.78 %
Coverage:
57.51 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
CSRP2
Parental gene aliases:
No gene alias available
Parental gene description:
cysteine and glycine-rich protein 2 [Source:HGNC Symbol;Acc:2470]

Genomic region (view in browser)





>retro_ecab_412
GACTGTGGTGAGAGGCTGGGCCTCAAGCCAGAGAGTGGTCAACCTCGCAAGCCAACAACA
AATCCTAATACTTCTAAATTTGCTCAGAAATATGGAGGTGCTGAAAAGTGTTCCAGATTT
GGGGATTCTGTGTACGCTGCCGAGAAGATAATTGGAGCTGGAAAGCCCTGACACAAAAAC
TGTTTCTGACGTGCCAAGCGTCGGATGAGTCCTGAATCAACAACTCTGACTGAGAAAGAA
GGTGAAATCTACTGGAAAGGATGCTACGCAAAGAAGTTTGGTCCCATGGGATTTGGCTAT
GGCCAAGGAGCAGGAGCTATTGTTCATGTTCAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGAEKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGFGY
D.GERLG.KPES.QP..PTTNPNTSKFAQKYGGAEKCSR.GDSVYAAEKIIGAGKP.HKNCF..AK...S.ESTTLTEKEGEIY.KGCYAK.FGP.GFGY
Retrocopy
DCGERLGLKPESGQPRKPTTNPNTSKFAQKYGGAEKCSRFGDSVYAAEKIIGAGKP*HKNCF*RAKRRMSPESTTLTEKEGEIYWKGCYAKKFGPMGFGY


Parental protein
GQGAGALVHAQ
GQGAGA.VH.Q
Retrocopy
GQGAGAIVHVQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide