RetrogeneDB ID:
retro_ecab_414
Organism:
Horse ( Equus_caballus )
Location:
17:33230196-33230551 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.46 %
Coverage:
99.2 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
RPL31
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L31 [Source:HGNC Symbol;Acc:10334]

Genomic region (view in browser)





>retro_ecab_414
GCTCCTGTAAAGAAGGGTGGGGAGAAGGGCCTTTCTGCCATCATTGAAGTGGTGACCAGA
GAATATACCATCATCATTCACAAGTGCATCTATGGAGTGGTCAAGAAGTGAGCCCCTTCT
ACACTCAAACGGATCTTGAAATCTACCATGAAGGAGATGGGAATTCAGATGTGCACATTG
ACACCAGGCTCACCAAAGCTGTCTGGGCCAAGGGAATAAGGAACGCCCCTACTGTATCTG
TGTGTGGTTGTCCAGTGATGAATATGAAGAGTCACCAAACAAACTCTATGCATTCTTTAC
CTACATAATTGTCACCATTTTCAAAACTCTACAGGCTGTCAATGTGGATGAGAAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
APAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMG-TPDVRIDTRLNKAVWAKGIRNVP-YRIRVRLSRKRNEDEDSP
AP.KKGGEK..G.SAI.EVVTREYTI.IHK.I.GV..KK.AP..LK.I.K..MKEMG...DV.IDTRL.KAVWAKGIRN.P.Y.I.V.LS....E.E.SP
Retrocopy
APVKKGGEK--GLSAIIEVVTREYTIIIHKCIYGV-VKK*APSTLKRILKSTMKEMG/NSDVHIDTRLTKAVWAKGIRNAP/YCICVWLSS--DEYEESP


Parental protein
NKLYTLVTYVPVTTFKNLQTVNVDEN
NKLY...TY..VT.FK.LQ.VNVDEN
Retrocopy
NKLYAFFTYIIVTIFKTLQAVNVDEN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide