RetrogeneDB ID:
retro_ecab_415
Organism:
Horse ( Equus_caballus )
Location:
17:37294712-37295285 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.73 %
Coverage:
78.28 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
FOLR4
Parental gene aliases:
No gene alias available
Parental gene description:
folate receptor 4, delta (putative) [Source:HGNC Symbol;Acc:32565]

Genomic region (view in browser)





>retro_ecab_415
AATGCCTGCTGCAGGGCTATCACCATGGGGGAAGCCCACCTGGATGTGTCCCTGCTCTAC
AACTTCATATTGGTCCATTGTGGATTGATGACCTGGGCCTGTCAAAAGCACTTCGTCCAG
GCCGCCTAGTTCTACGGGTGCTCCCGGAACCTGGGGCCTTGGATCCAGCGCGTGACCCCG
AGTGGGCAGGCAGAGCGAATTTTGGATGAGCCCCTCTGCCTGGAGGACCGTGAGTAGTGG
TGCGCAGGCTGCCGCTCATCTTACACTTGCAAATCCAGTGGGCAAGGCGCCTGCGACCGG
AGTCGGGTGAACAACTGCTGCCCTACAAGGGCCCAGTGCCACTCTTTTCCCCCGTTACTA
CTCCACCCTCGCTGACCTGTGCGAGAAGATTTGGAGCAACTCCTTCAAGGTGAGCCCTGA
GCACCGCAACAGGGGGCGGTACTTCCAGAAGTGGGTGAGCCTGCTCAGGGCAGCCCCAGT
GAGGCTAGGACCCGCCCCTTCGCCAGCCCTTCCCCGTTCTGGCAAATTCCCAACATTCTA
TTGGCCTTCTCTCTGTTCCTGTTATTCCTTTCC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SACCTANTSWKAHLNVSLLYNFSLVHCGLMMPGCQRHFIQAVCFYECSPNLGPWIQQVDLSGQGERILDAPLCREDCEQWWEDCRTSYTCKSNWHGGWDW
.ACC.A.T...AHL.VSLLYNF.LVHCGLM...CQ.HF.QA..FY.CS.NLGPWIQ.V..SGQ.ERILD.PLC.ED.E.W...CR.SYTCKS...G..D.
Retrocopy
NACCRAITMGEAHLDVSLLYNFILVHCGLMTWACQKHFVQAA*FYGCSRNLGPWIQRVTPSGQAERILDEPLCLEDRE*WCAGCRSSYTCKSSGQGACDR


Parental protein
SGGKNRCPARARCHP-FPHYFPTPADLCERIWSNSFKASPEHRNSGRCLQKWF-EPAQGNPNEAVARLFASPAWSWEFSHTLMAFSLFLSCLS
S...N.CP.RA.CH..FP.Y..T.ADLCE.IWSNSFK.SPEHRN.GR..QKW..EPAQG.P.EA..R.FASP...W.....L.AFSLFL..LS
Retrocopy
SRVNNCCPTRAQCHS\FPRYYSTLADLCEKIWSNSFKVSPEHRNRGRYFQKWV/EPAQGSPSEARTRPFASPSPFWQIPNILLAFSLFLLFLS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide