RetrogeneDB ID:
retro_ecab_416
Organism:
Horse ( Equus_caballus )
Location:
17:37938713-37939117 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
81.75 %
Coverage:
99.27 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
CRABP1
Parental gene aliases:
No gene alias available
Parental gene description:
cellular retinoic acid binding protein 1 [Source:HGNC Symbol;Acc:2338]

Genomic region (view in browser)





>retro_ecab_416
CCCAACTTCGCGGACACCTGGAAGCTGATCAGCAGTGAGAATTTTGACGAGCTACTCAAG
ACGCCGGGCGTGAACGCCATGCTGAGGAAAGTGGCCGTGGTGACTGAGTCCAAGCCGCAC
GTGGAGATCCGCCAGGATGATCAGTTCTGTATCAAGACATCCACCACGGTGTGCACCACC
AAGATCAACTTCAAGGTCGGAGAAGGCTTTGATGAGGAGACAGTGGATGGACGCAAGTGC
AGGAGTTTAGCCACTTGAGAGAATGAAAACAAGATCCACTGCACACAAACTCTCATTGAG
GGGGAGGCCCCAAAACCTACTGCACCTGCGAGCTGGCCAGTGACGAGCTCATCATGAAGT
TCGGCGCCCACGACTTGGTCTGCACGAGAATTTATGTTCGGAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVRTTEINFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLL
PNFA.TWK..SSENFDELLK..GVNAMLRKVAV...SKPHVEIRQD.DQF.IKTSTTV.TT.INFKVGEGF.EETVDGRKCRSLAT.ENENKIHCTQTL.
Retrocopy
PNFADTWKLISSENFDELLKTPGVNAMLRKVAVVTESKPHVEIRQD-DQFCIKTSTTVCTTKINFKVGEGFDEETVDGRKCRSLAT*ENENKIHCTQTLI


Parental protein
EGD-GPKTYWTRELANDELILTFGADDVVCTRIYVRE
EG..GPKTY.T.ELA.DELI..FGA.D.VCTRIYVR.
Retrocopy
EGE/GPKTYCTCELASDELIMKFGAHDLVCTRIYVRK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide