RetrogeneDB ID:
retro_ecab_417
Organism:
Horse ( Equus_caballus )
Location:
17:38085563-38086128 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
64.62 %
Coverage:
74.9 %
Frameshifts:
4
Stop codons:
2
Parental gene:
Parental gene symbol:
SET
Parental gene aliases:
No gene alias available
Parental gene description:
SET nuclear oncogene [Source:HGNC Symbol;Acc:10760]
Genomic region (view in browser)
>retro_ecab_417
GAAAAAGAACAGCAAGAAGCAGTTGGACATGTTGATGAAATACAAAATGAAATGGACAGA
CTTAATGAACAAGCCCATAAGGAGATTTGAAAGTACAACAAAAATATAACAAATTCCACT
AACCATTTTTTCAGAAGAGGATGGAATTGCTCGCCAAAATCCCAAATATTGTGGGAATAT
CTGTCAGCCATCCACAAGTCTGCACTGCTTGGGGAGGATGATGAAGGGAGCTGCGCTGTT
TGAGGAGAGTTGAAGACAGAGAATTTGAAGATATTAAATCAGGTTACAGAATAGATTTTT
ATTTTGAAGAAAACCCTTACTTCAAAAATGAAGTGTTCTCCAGAGAATTTCCTGAGACTG
AGAGTAGTGATCCATCTTTAAAGTCCACTAAAATCAAATGGAAATCTGGAAAGGATTTGA
CAAAACGTTGAAGTCAAACACACAATAAAACCGACAGGAAGGGACAGCATGAGGAATCAG
AAGCTTCCTTGGGTGGTTTACTGGCCATTCTGACACAGGTGCAGATGCGTTAGAAGAGGT
CAGCAAAGATGATATTTGGCCTAAT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.0 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.0 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
