RetrogeneDB ID:
retro_ecab_417
Organism:
Horse ( Equus_caballus )
Location:
17:38085563-38086128 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.62 %
Coverage:
74.9 %
Frameshifts:
4
Stop codons:
2


Parental gene:
Parental gene symbol:
SET
Parental gene aliases:
No gene alias available
Parental gene description:
SET nuclear oncogene [Source:HGNC Symbol;Acc:10760]

Genomic region (view in browser)





>retro_ecab_417
GAAAAAGAACAGCAAGAAGCAGTTGGACATGTTGATGAAATACAAAATGAAATGGACAGA
CTTAATGAACAAGCCCATAAGGAGATTTGAAAGTACAACAAAAATATAACAAATTCCACT
AACCATTTTTTCAGAAGAGGATGGAATTGCTCGCCAAAATCCCAAATATTGTGGGAATAT
CTGTCAGCCATCCACAAGTCTGCACTGCTTGGGGAGGATGATGAAGGGAGCTGCGCTGTT
TGAGGAGAGTTGAAGACAGAGAATTTGAAGATATTAAATCAGGTTACAGAATAGATTTTT
ATTTTGAAGAAAACCCTTACTTCAAAAATGAAGTGTTCTCCAGAGAATTTCCTGAGACTG
AGAGTAGTGATCCATCTTTAAAGTCCACTAAAATCAAATGGAAATCTGGAAAGGATTTGA
CAAAACGTTGAAGTCAAACACACAATAAAACCGACAGGAAGGGACAGCATGAGGAATCAG
AAGCTTCCTTGGGTGGTTTACTGGCCATTCTGACACAGGTGCAGATGCGTTAGAAGAGGT
CAGCAAAGATGATATTTGGCCTAAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EKEQQEAIEHIDEVQNEIDRLNEQASEEI-LKVEQKYNKLRQP-FFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEA-LHYLTRVEVTEFEDIKSG
EKEQQEA..H.DE.QNE.DRLNEQA..EI.LKV.QKYNK...P.FF........K....W......H...SALLGE.DE...L..L.RVE..EFEDIKSG
Retrocopy
EKEQQEAVGHVDEIQNEMDRLNEQAHKEI/LKVQQKYNKFH*P\FFRRGWNCSPKSQILWEYLSAIHK--SALLGEDDEGS/LRCLRRVEDREFEDIKSG


Parental protein
YRIDFYFDENPYFENKILSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPE-SFFTWFTDHSDAGADELGEVIKDDIWPN
YRIDFYF.ENPYF.N...S.EF...ES.DPS.KST.IKWKSGKDLTKR.SQT.NK..RK.QHEE.E.SF..WFT.HSD.GAD.L.EV.KDDIWPN
Retrocopy
YRIDFYFEENPYFKNEVFSREFPETESSDPSLKSTKIKWKSGKDLTKR*SQTHNKTDRKGQHEESE/SFLGWFTGHSDTGADALEEVSKDDIWPN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide