RetrogeneDB ID:
retro_ecab_418
Organism:
Horse ( Equus_caballus )
Location:
17:38724064-38724493 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.67 %
Coverage:
85.21 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
COX4I1
Parental gene aliases:
No gene alias available
Parental gene description:
cytochrome c oxidase subunit IV isoform 1 [Source:HGNC Symbol;Acc:2265]

Genomic region (view in browser)





>retro_ecab_418
CTGCCTACCAGAGTATTTAGCCTAATTGACAAATGAGCAATTTCCACCTCCCTGTGTGTA
GGAGCACACGCAAGGGTTGTGAAGATGGAAGGCTCTGCTCTCGCGAACGGTGCCGATCTG
CATGACTATCCTCTGCCTGATGTGGCCCACGTCAAGAACCTTTCTTCCAGATAAAAGCTT
TGAAAGAGAAGGAGGTGGCCTTCTGGAGCAGCCTCTCCATTGATGAAAAGTTTGGATTCT
ATCATGTTAAGTTCAACAAGAGCTTCGCTGAGTTGAATAGGCGCACTAACCAGCGGAAGT
GGATCTGGGGCGCTGCCCTGTTCTTCATCGACTTCACTGCTCTGGTTCTGATATGGAGAA
GCACTTTGTGGACGGCCCTATCCCGCACACTCTGAAGAGAAGTGGGTGGCCAAGCAGACC
GAGAAGATG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LATRVFSLIGKRAISTSVCVRAHGSVVKSEDFALPSYVDRRDYPLPDVAHVKSLSA-SQKALKEKEKAPWSSLSIEEKVELYRIKFNESFAEMNRGTNEW
L.TRVFSLI.K.AISTS.CV.AH..VVK.E..AL....D..DYPLPDVAHVK.LS....KALKEKE.A.WSSLSI.EK...Y..KFN.SFAE.NR.TN..
Retrocopy
LPTRVFSLIDK*AISTSLCVGAHARVVKMEGSALANGADLHDYPLPDVAHVKNLSS/QIKALKEKEVAFWSSLSIDEKFGFYHVKFNKSFAELNRRTNQR


Parental protein
KTVVGAAMFFIGFTALLLIW-EKHYVYGPVPHTF-EEEWVAKQTKRM
K...GAA.FFI.FTAL.LIW.EKH.V.GP.PHT..EE.WVAKQT..M
Retrocopy
KWIWGAALFFIDFTALVLIW/EKHFVDGPIPHTL/EEKWVAKQTEKM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide