RetrogeneDB ID:
retro_ecab_42
Organism:
Horse ( Equus_caballus )
Location:
3:98737587-98738058 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
100.0 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_42
ATGGCGCCGAAAGCGAAGAAGGAAGCCCCTGCCCCTCCCAAAGCCGAAGCCAAAGCAAAG
GCTTTGAAGGCCAAGAAAGCTGTGCTAAAAGGCGTCCAGAGCCACAAAAAAAAGAAGATC
CGTACGTCACCCACCTTCCGACGGCCCAAGACACTGCGGCTCCGAAGGCAACCCAAGTAT
CCTCGGAAGAGCGCCCCGCGGAGAAACAAGCTTGACCACTATGCCATCATCAAGTTCCCC
TTGACCACCGAATCAGCCATGAAGAAGATAGAAGACAACAACACGCTTGTGTTCATTGTG
GATGTCAAGGCCAACAAGCATCAGATCAAACAGGCTGTAAAGAAGCTCTATGACATTGAT
GTGGCCAAGGTCAACACCCTGATCAGGCCTGATGGAGAGAAGAAGGCATATGTTCGACTG
GCTCCTGACTATGATGCTTTGGATGTTGCCAACAAAATTGGGATCATCTAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.08
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGVQSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIV
MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGVQSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIV
Retrocopy
MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGVQSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIV


Parental protein
DVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII
DVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII
Retrocopy
DVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide