RetrogeneDB ID:
retro_ecab_420
Organism:
Horse ( Equus_caballus )
Location:
17:42465380-42465588 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.72 %
Coverage:
66.35 %
Frameshifts:
3
Stop codons:
3


Parental gene:
Parental gene symbol:
RPL37
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L37 [Source:HGNC Symbol;Acc:10347]

Genomic region (view in browser)





>retro_ecab_420
TACCACTGTGAGAAGTAGACCTGTGGCAAATGTATCTAACCTATTAAGTGCAAAGAGAAA
GTATACCTCAAGTGGCAAGGCTAAACTGTGAAAGGCCACTGGTACAGGTCAACTGAGGCA
CGAGAAATTGGATACTGCAGATTCAGGCATGAGTTACCTGAAGGAACAACACCTAAATCT
GAAAGTAGCTGTGGTAGCATGCAGTTCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
YHLQKSTCGKCGYPAK-RKRKYNWSAKAKRRNTTGTGRMRHLK-IVYRRFRHGFREGTTPKP-KRAAVAASS
YH..K.TCGKC..P.K..KRKY..S.KAK....TGTG..RH.K.I.Y.RFRH...EGTTPK..K.A.VA.SS
Retrocopy
YHCEK*TCGKCI*PIK\AKRKYTSSGKAKL*KATGTGQLRHEK/IGYCRFRHELPEGTTPKS\KVAVVACSS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide