RetrogeneDB ID:
retro_ecab_422
Organism:
Horse ( Equus_caballus )
Location:
17:46484312-46484697 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
90.0 %
Coverage:
98.47 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
RPS24
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S24 [Source:HGNC Symbol;Acc:10411]

Genomic region (view in browser)





>retro_ecab_422
AACGACACAGTAACTATCCGGACCCAGAAGTTCATGACCAACCGACTACTTCAGCGGAAA
CAAATGGTCATAGATGTTCTTCACACCTGGGAAGGCAACAGTGCCTAAGACAGAAATTCG
GGAAAAACTAGCCAAAATGTACAAGACCATACCAGATGCCATCTTTGTATTTGGATTCAG
AACCCATTTTGGTGGTGGGAAGACAACTGGCTCTGGCATGATTTATGATTCCTGGGATCA
CACAAAGAAAAATGAACCAAAACATAGACTTGCAAGACGTGGCCTGTATGAGAAGAAAAA
CACCTCAAGAAAACGAAAGGAAGGCAAGAACAGAATGAAGAAAGTCAGGGGGCCTGCGAA
GGCCAATGTCGGTGCTGGCAAAAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 20.62
SRP021940_cerebellum 3.63
SRP021940_embryo 12.05
SRP021940_placental_villous 8.81
SRP021940_synovial_membrane 18.73
SRP021940_testis 11.1

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NDTVTIRTRKFMTNRLLQRKQMVIDVLH-PGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKK
NDTVTIRT.KFMTNRLLQRKQMVIDVLH.PGKATVPKTEIREKLAKMYKT.PD.IFVFGFRTHFGGGKTTG.GMIYDS.D..KKNEPKHRLAR.GLYEKK
Retrocopy
NDTVTIRTQKFMTNRLLQRKQMVIDVLH\PGKATVPKTEIREKLAKMYKTIPDAIFVFGFRTHFGGGKTTGSGMIYDSWDHTKKNEPKHRLARRGLYEKK


Parental protein
KTSRKQRKERKNRMKKVRGTAKANVGAGKK
.TSRK.RKE.KNRMKKVRG.AKANVGAGKK
Retrocopy
NTSRK-RKEGKNRMKKVRGPAKANVGAGKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide