RetrogeneDB ID:
retro_ecab_423
Organism:
Horse ( Equus_caballus )
Location:
17:57116237-57116658 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
74.48 %
Coverage:
73.1 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
FCF1
Parental gene aliases:
No gene alias available
Parental gene description:
FCF1 rRNA-processing protein [Source:HGNC Symbol;Acc:20220]

Genomic region (view in browser)





>retro_ecab_423
CAACACCCTTCCTGCTTATTCTTCCAATTGTAACACAGAGTTGGGCCCACTTTAATAGAT
CCTGGTTGATACCAACTTTGTCAACTTTTCCATTAAAGCTAAACTAGACTTAGTGCAGTC
AATAATGAACTGTGTGTGTGCCAAGTGTATCTCTTTTGTAACGGCTGAAACTGAGAAATT
GGGGCAGAAGTGTCAAGTGGCTCTAAGGATTGCCAAGGATTCAAGATTTGAATGATTACC
GCGCACGCACAAAGAAACCTATGCAGATGACTGCTTAGTACACAGAGTAACACAGCACAA
GTATTACATTATGGCCACAGTTGACCACAACTTTAAAGGAAGAATCCAGAAGATCCCTGG
AGTTCCCATCATGTACAATTCTAACTATAGGTACAATATTGAGCAGATGCCAGTTGATTA
T

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QHPSCLFFQY-NTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVQR
QHPSCLFFQ..NT.LGP...ILVDTNF.NFSIKAKLDLVQS.M.C..AKCI...T....AE.EKLGQK..VALRIAKD.RFE.LP.THK.TYADDCLV.R
Retrocopy
QHPSCLFFQL\NTELGPL**ILVDTNFVNFSIKAKLDLVQSIMNCVCAKCISFVT----AETEKLGQKCQVALRIAKDSRFE*LPRTHKETYADDCLVHR


Parental protein
VTQHKCYIVATVDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDY
VTQHK.YI.ATVD...K.RI.KIPGVPIMY.SN.RYNIE.MP.DY
Retrocopy
VTQHKYYIMATVDHNFKGRIQKIPGVPIMYNSNYRYNIEQMPVDY


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide