RetrogeneDB ID:
retro_ecab_424
Organism:
Horse ( Equus_caballus )
Location:
17:62207472-62208055 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
58.21 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_424
TTAGAGGACAGGAATCTAGAAATGCTTCAGGTGCAGGGGGAGAGAAAACTAAGATTTTAA
AAAAATGAAGAAATTCTTCAAGAAATATCTGACTCAATTAGGAAAAGCAACATAAGGATT
ATAGGTATTCCAGAGGGAGAAAGGAGCAGGGAGTTTCTTTAAAAAAAACAATAGCTGACA
ACTTCCCAAACCTCAGAAAGAATTGGACTTACAAGTATATGAAGCCAATGGAACCCCCAA
TTACATCAATGCAAAAAGACCTTCTCCAAGGCATATAATATTAAAACCGGCAAAAAGCAA
TGACAAAGAAAAATTACTAAGGGCAGCAAGGCAGAAGTAAATAATCTACAAAGGAACCCC
TATAAGGCTTTTAGCGGATTTCTCAGCAGAAACCTTAAGGCTAAGAAGATGGAATCATAT
GTCCAAAATACTGAAAGCCAAAAACTTTCAGTCAAGAATACCTTATCCAGTGAAACTATC
CTTCATATACAATTGAGAAATGCAAGGTTTTCCAGATAAACAAAAGCTGAGAGAGTTCAT
TGACACAAGGCCTGCTTTACAAGAAATGACCAAGGACGTCCTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LEDRNTEMLKMEEERELRLKRSEDIFQEIYNPIRKRNIRIISIPTGEERQNRRESLFKE-IITENFLNLGKG-LEIQVKEANRTPNYINVERPSPRHILV
LEDRN.EML....ER.LR....E.I.QEI...IRK.NIRII.IP...E....RE.L.....I..NF.NL.K..L..QV.EAN.TPNYIN..RPSPRHI..
Retrocopy
LEDRNLEMLQVQGERKLRF*KNEEILQEISDSIRKSNIRIIGIP---EGERSREFLXXX/XIADNFPNLRKN/LDLQVYEANGTPNYINAKRPSPRHIIL


Parental protein
KLAKLVMKEYIMAEAARQKKITYKGSPIRLSADFSQTVQTRREWNDIIKILKYKNYPPRILYPVKLSFRYGREIKAFQDKQKLREFITTRPPLQEMMKTA
K.AK...KE.....AARQK.I.YKG.PIRL.ADFS......R.WN...KILK.KN...RI.YPVKLSF.Y..E...F.DKQKLREFI.TRP.LQEM.K..
Retrocopy
KPAKSNDKEKLL-RAARQK*IIYKGTPIRLLADFSAETLRLRRWNHMSKILKAKNFQSRIPYPVKLSFIYN*EMQGFPDKQKLREFIDTRPALQEMTKDV


Parental protein
L
L
Retrocopy
L


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide