RetrogeneDB ID:
retro_ecab_425
Organism:
Horse ( Equus_caballus )
Location:
17:65261388-65261857 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
79.25 %
Coverage:
90.75 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
PTP4A1
Parental gene aliases:
No gene alias available
Parental gene description:
protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634]

Genomic region (view in browser)





>retro_ecab_425
AACGTGAGATTTCTTATTGCACACAATCTGACCAATGCAACCTTAAACACATTTGTAGAG
GAACTTAAGACGTATGGAGTTACCACAATAGTAAGAGTATGTGAAGCAACTTATGACACC
GCTCTCGTAGAGAAAGAAGGAGTCCATGTTCTTGATTGGCCTTTTGATGGCGGTGCACTT
CCATCAACCAGATTGTCAGTGACTGGTTAAGTCTTGTAAAGATGAAGTTTCCTGAGGAAC
CTGAATGTTGTATTCCTGTTCGTTGTGTTGCAGGCCTTCGGAGAGCTCCGAGCTTGTTGC
CCCAGCATTAATTGAAGGTGGAACGAAATATGGAGATGCAGTACAGTTCATAAGACCAAA
GCGGTGTGGGGCTTTTAACAGGAAGCAACCTTTGTCTTTGGAAAAGTATCATCCTAAAAT
GCAGCTGTGCTTCAAAGACTGCAGTGGTCATAGAAACAACTGTTGCGTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPS-NQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAP-V
N.RFLI.HN.TNATLN.F.EELK.YGVTTIVRVCEATYDT.LVEKEG.HVLDWPFD.GA.PS.NQIV.DWLSLVK.KF.EEP.CCI.V.CVAGL.RAP..
Retrocopy
NVRFLIAHNLTNATLNTFVEELKTYGVTTIVRVCEATYDTALVEKEGVHVLDWPFDGGALPS/NQIVSDWLSLVKMKFPEEPECCIPVRCVAGLRRAP/E


Parental protein
LVALALIEGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCV
LVA.ALIEGG.KY.DAVQFIR.KR.GAFN.KQ.L.LEKY.PKM.L.FKD..GHRNNCCV
Retrocopy
LVAPALIEGGTKYGDAVQFIRPKRCGAFNRKQPLSLEKYHPKMQLCFKDCSGHRNNCCV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide