RetrogeneDB ID:
retro_ecab_429
Organism:
Horse ( Equus_caballus )
Location:
18:30422302-30422720 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
76.76 %
Coverage:
96.55 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_429
TTCACGTCTTCTGATCAGAACAAGAACCACGAAAGGCATTTCAACGCACCTTCCCACATT
TGCAGGAAGATTATGTCTTTCCCTCTTTCCAAAGACCTGAGACAAAAGTACAATGTTTAA
TCCATGTCCATCTGAAAGGATGATAAGTTCAGGTTGTGTGAGGACACTACAAAGGTCAGC
AAATTGGCAAAGTAGTCCAAATTTACAGGAAGAAATGTGTCATCTACACTGAACTTGTGC
AGTGGGAGAAGCCAATGACACAACTGTCCATGTCGGCATGCAGCCCAGCAAAGTGGTTGT
CACCAGGCTAAAACTGCACAAAGATGGCAAAAAGATCCTTGAACATAAAACCAATTCTTG
CCAAGTAGGGAAGGAAAAGAGCAAATATAAGGAAGAAACAATTGAGAAGATGTGGGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDE-VQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREK-ANGTTVHVGIHPSK
F..SD..KN..RHFNAPSHI.RKIMS.PLSK.LRQKYNV.SM.I.KDD..VQVV.GHYKGQQIGKVVQ.YRKK.VIY.E.VQ.EK.AN.TTVHVG..PSK
Retrocopy
FTSSDQNKNHERHFNAPSHICRKIMSFPLSKDLRQKYNV*SMSI*KDDK/VQVV*GHYKGQQIGKVVQIYRKKCVIYTELVQWEK/ANDTTVHVGMQPSK


Parental protein
VVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETIEKMQE
VV.TRLKL.KD.KKILE.K..S.QVGKEK.KYKEETIEKM.E
Retrocopy
VVVTRLKLHKDGKKILEHKTNSCQVGKEKSKYKEETIEKMWE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide