RetrogeneDB ID:
retro_ecab_43
Organism:
Horse ( Equus_caballus )
Location:
2:45732469-45733657 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
92.23 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_43
ATGTCAGAAGGAAACGCCGCGGGCGAGCCCAGCGCTCCGGGAGGGTCCCGACCTCTCGGG
GCCCCGGGGGCTCATCGGAGGCGGCCGGCGCCTCCCCTCACGCCGGGCCGCCTTCCCTCC
ATTTGCTCCAGGGACCTCACCCTCGGGGGAGTCAAGAAGAAAACCTTCACCCCAAATATC
ATCAGTCGGAAGATCAAGGAAGAGCCTGAGGAAGAAGTAACCATCAAGAAGGAGAAGCCT
GAAAGGGATAGAGACCGACAGCGAGAGGGGCACGGGCGGGGCCGGGGTCGCCCAGAAGTG
ATCCAGTCCCACTCCGTCTTTGAGCAGGGCCCCGCTGAAATGATGAAGAAAAAGGGGAAC
CGAGACAAGACAGTGGATGTCTCGGACATTGGGCCCTCTCACATCATCAACAGCAAAAAA
GAGAAGAGGGAGACAGATGAAGAAACAAAACAGATCTTGCGCATGCTGGAGAAGGATGAT
TTCATCCATGACCCTGGGCTGAGGAATGACACTCGAAACATGCCTGTGCAGCTGCCGCTG
GCTCACTCAGGATGGCTTTTTAATAAAGAGAATGAAGAACCGGATGTTAAACCTTTGTTG
GCTGGCCCCAAGGAAGAGGACGTGGAGGTGGATGTGCCTGTTTTGAAGGTGAAAGAGGAG
CCACGAGCCAAGGAGGAGGAGGCCAAGGTGAAGGCTCCCAGAGCAGCCGGAAAGACCCCG
GGCCTCCCGAAGGATGTCTCTGTGGCAGAGCTGCTCAGGGAGCTGAGCCTTGCCCAGGAG
GAAGAGCTGCTGTTCCTCCAGCTGCCGGACACGCTCCCTGGCCAGCCACCTACTCAGGAC
ATCAAGCCTATCAAGACAGAGGTGCAGAGTGAGGATGGACAGACGGTGGTTATAAAGCGG
GAGAAAGACCGGGAAGCCAGGCTGGCGGAGAATGCTTGTACCCTGGCTGACCTGTCAGAG
GGCCAGGTTGGCAAGTTGCTCATCCGCAGGTCGGGGAAGGTGCACCTCCTCCTGGGCAAG
GTGACTCTGGATGTGACCGTAGGGACCGCCTGCTCTTTCCTGCAGGAGCTGGTGTCTGTG
GGCCTTGGAGACAGTAGGACAGGTGAAATGATAGTCCTGGGACATGTAAATCACAAACTT
GTGTGTTCCCCGGATTTTGAATCCCTCTTGGATCACAAACACCGGTAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.23
SRP021940_cerebellum 0.1
SRP021940_embryo 0.19
SRP021940_placental_villous 0.45
SRP021940_synovial_membrane 0.52
SRP021940_testis 0.24

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PGGPRPLLSGARGLIGRRPAPPLTPGRLPSIRSRDLTLGGVKKKTFTPNIISRKIKEEPKEEVTIKKEKRERDRDRQREGHGRGRGRPEVIQSHSIFEQG
PGG.RPL..GA.G...RRPAPPLTPGRLPSI.SRDLTLGGVKKKTFTPNIISRKIKEEP.EEVTIKKEK.ERDRDRQREGHGRGRGRPEVIQSHS.FEQG
Retrocopy
PGGSRPL--GAPGAHRRRPAPPLTPGRLPSICSRDLTLGGVKKKTFTPNIISRKIKEEPEEEVTIKKEKPERDRDRQREGHGRGRGRPEVIQSHSVFEQG


Parental protein
PAEMMKKKGNWDKTVDVSDIGPSHIINIKKEKRETDEETKQILRMLEKDDFIDDPGLRNDTRNMPVQLPLAHSGWLFKEESEEPDVKPSLAGPKEEDMEV
PAEMMKKKGN.DKTVDVSDIGPSHIIN.KKEKRETDEETKQILRMLEKDDFI.DPGLRNDTRNMPVQLPLAHSGWLF..E.EEPDVKP.LAGPKEED.EV
Retrocopy
PAEMMKKKGNRDKTVDVSDIGPSHIINSKKEKRETDEETKQILRMLEKDDFIHDPGLRNDTRNMPVQLPLAHSGWLFNKENEEPDVKPLLAGPKEEDVEV


Parental protein
DVPVVKVKEEPRDEEEEAKVKAPPRAARKTPGLPKDVSVAELLRELSLAQEEELLFLQLPDTLPGQPPTQDIKPIKTEVQSEDGQMVVIKQEKDREARLA
DVPV.KVKEEPR..EEEAKVKA.PRAA.KTPGLPKDVSVAELLRELSLAQEEELLFLQLPDTLPGQPPTQDIKPIKTEVQSEDGQ.VVIK.EKDREARLA
Retrocopy
DVPVLKVKEEPRAKEEEAKVKA-PRAAGKTPGLPKDVSVAELLRELSLAQEEELLFLQLPDTLPGQPPTQDIKPIKTEVQSEDGQTVVIKREKDREARLA


Parental protein
ENACTLADLTEGQVGKLLIRRSGKVQLLLGKVTLDVTVGTACSFLQELVSVGLGDSRTGEMTVLGHVKHKLVCSPDFESLLDHKHR
ENACTLADL.EGQVGKLLIRRSGKV.LLLGKVTLDVTVGTACSFLQELVSVGLGDSRTGEM.VLGHV.HKLVCSPDFESLLDHKHR
Retrocopy
ENACTLADLSEGQVGKLLIRRSGKVHLLLGKVTLDVTVGTACSFLQELVSVGLGDSRTGEMIVLGHVNHKLVCSPDFESLLDHKHR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide