RetrogeneDB ID:
retro_ecab_430
Organism:
Horse ( Equus_caballus )
Location:
18:32427922-32428276 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.67 %
Coverage:
96.75 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
TXNDC17
Parental gene aliases:
No gene alias available
Parental gene description:
thioredoxin domain containing 17 [Source:HGNC Symbol;Acc:28218]

Genomic region (view in browser)





>retro_ecab_430
GAGGAGGTGAGTGTGTCTGGCTTCCAGGAGTTCAGCCGGCTGTGAAGCAGCGCGATGGCA
AGACCATTTTTGCCTGGCTCACCGGTTCTAAGGACGCCAGAGGGAAAAGCTGGTGCCCCT
ACTGTGTGCAGGCTGAACCGGGCGTTCCAAGGAGCTGACGTAGGTTGGTGAAGGATACGT
GTTCGTCTCCTGCCAAGGAGGAGAAAAGCCTTATTGAAAAGATCCGAACAATGACTTCAG
AAAAATCTTGAAAGTCACTGCAGTGCCTACACTATTTAAGTATGGAACATCTCAAAACTG
GTAGAATCTGAGAGTTTTCCAGGTGACTTTGTGGAGACGTGGTTCTCTGAAGAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EEVRVSGFEEFNR-AVEQHKGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVQEG-LKHVGEGCVFIHCQVGERPYWKDPNNDFRKNLKITAVPTLLKYGTP
EEV.VSGF.EF.R.AV.Q..GKTIFA..TGSKDA.GKSWCP.CVQAEP.V....L..VGEG.VF..CQ.GE.PY.KDPNNDFRK.LK.TAVPTL.KYGT.
Retrocopy
EEVSVSGFQEFSR/AVKQRDGKTIFAWLTGSKDARGKSWCPYCVQAEPGVPRS/LT*VGEGYVFVSCQGGEKPY*KDPNNDFRKILKVTAVPTLFKYGTS


Parental protein
Q-KLVESECLQANLVEMLFSED
Q.KLVESE......VE..FSED
Retrocopy
Q/KLVESESFPGDFVETWFSED


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide