RetrogeneDB ID:
retro_ecab_432
Organism:
Horse ( Equus_caballus )
Location:
18:43357750-43358321 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.96 %
Coverage:
66.32 %
Frameshifts:
4
Stop codons:
3


Parental gene:
Parental gene symbol:
COQ2
Parental gene aliases:
No gene alias available
Parental gene description:
coenzyme Q2 4-hydroxybenzoate polyprenyltransferase [Source:HGNC Symbol;Acc:25223]

Genomic region (view in browser)





>retro_ecab_432
AATACAGCTCTGAGAGAAGGATCCCTACTTCTTGTCATCACCTACCCACTAACAGAAAGA
ATTACATACTGGCGCCAATTAGTCTTAGCTTTGGGGTTGACTTTTAATTGAAGAGTGTTC
CTTGGATGGTCTGTTATCAAGGGTCCCTATGATCCATCTGTTCACCTGCCTCTTCCTTTT
TCTGGAATTGCATGTGCACTAATATATGATACTATTATGCCTATCAGGACAAAAGAGATG
ATGTTCCGATTGGTCTTAAGTCCACAACACTGCAGCTCAGTGAAAACACCAAGCAGTGGC
TCAGTGGCTTCAGCATCGTGATGCTGGAGGGACTGAGCCTGTGGGAGTGAACAGTGATCA
GACCCCTCCCTACAGCCCTGCTCTGGCTGCTGGAGACCAAGTGGCTTGTCAGATCTACAC
TCTAGACATCCGCTCTTGAGGATTGTGGAAATAAATTTACCTCCAACCAAACAATATGAC
TAATGGTCTTCTAGAGATTGTCCTTGGGAATTTGTGGAAAGAAAAGAAGACAGACCAAAT
GAAGAAAAATATAGACAGCAGAATAGAAAAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SVALGAASLLLVITYPLMKRVTYWPQL--ALGLAFNWGALLGWSAVKGSCDPSVCLPLYFSGIMWTLIYDTI-YAHQDKKDDALIGLKSTALWFREDTKQ
..AL...SLLLVITYPL..R.TYW.QL..ALGL.FN....LGWS..KG..DPSV.LPL.FSGI...LIYDTI.YA.QDK.DD..IGLKST.L...E.TKQ
Retrocopy
NTALREGSLLLVITYPLTERITYWRQLVLALGLTFN*RVFLGWSVIKGPYDPSVHLPLPFSGIACALIYDTI/YAYQDKRDDVPIGLKSTTLQLSENTKQ


Parental protein
WLSGFSVAMVGALSL-VGVSSEQTAPYYAALAAVGAHLARQIYTLDIHRPEDCW-DKFTSNRTVGLIIF-LGIVLGNLWKQKKTDETKKKIDYVIEN
WLSGFS..M...LSL.VGV.S.QT.PY..ALAA.G...A.QIYTLDI.R....W..KFTSN.T..L..F.L.IVLGNLWK.KKTD..KK.ID..IEN
Retrocopy
WLSGFSIVMLEGLSL/VGVNSDQTPPYSPALAA-GDQVACQIYTLDI-RS*GLW\NKFTSNQTI*LMVF/LEIVLGNLWKEKKTDQMKKNIDSRIEN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide