RetrogeneDB ID:
retro_ecab_433
Organism:
Horse ( Equus_caballus )
Location:
18:44418524-44419019 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
53.25 %
Coverage:
51.89 %
Frameshifts:
3
Stop codons:
3


Parental gene:
Parental gene symbol:
PRPS1
Parental gene aliases:
No gene alias available
Parental gene description:
phosphoribosyl pyrophosphate synthetase 1 [Source:HGNC Symbol;Acc:9462]

Genomic region (view in browser)





>retro_ecab_433
ATGCCAAATATCAAAATCTTTAGCTGCAGCTCCTACCAGGACTCATCTCAGAAAATTCCC
TACTGCTTGGTAAAGGAATTAGGCAAAGTGTTCACTGAAAGATTCGGCAACTAAGAGATA
GTCCTGGAAGTTGGTGAGAGTGTGCATGGACAGGAGGATGTTTACACTGTTCAGAGCAAC
TGAGACAAAACAATGACAATCTGTTGCAGCTTCTAATCATGGGTAATGCCTGCAATATTA
CTGCAGCCAACTATGTTACCGTATTTGTCCCACACTTCCCTTAGGCCTGGCAGAATAAGA
AAAATAAAAGCCAAGCCCCAAACTTGATCAAACTTGCTACAAATATGTTATGCATGGCAG
ACATGGATCACACTATCCCCATGATGTATGTGTTTCTAAGATTCGGAGCTTGTTGGCATC
CCAATGAATAATTTGTATGTGAAGCAAGCTGACCTAAAGTGGATGAAGAATGATATCTTT
CAGTGAAGCAACTGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MPNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRG-EDVYIVQSG-CGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQD
MPNIKIFS.SS.QD.SQKI...L..ELGKV.T..F.N.E...E.GESV.G.EDVY.VQS......NDNL..LLIM.NAC.I..A..VT...P.FP.A.Q.
Retrocopy
MPNIKIFSCSSYQDSSQKIPYCLVKELGKVFTERFGN*EIVLEVGESVHGQEDVYTVQSN/LRQNNDNLLQLLIMGNACNITAANYVTVFVPHFP*AWQN


Parental protein
KKDKSRAPISAKLVANMLSVAGADHIITM-DLHASQIQGFF-DIPVDNLYAEPAVLKWIRENISEWRNC
KK.KS.AP...KL..NML..A..DH.I.M.D...S.I......IP..NLY...A.LKW....I....NC
Retrocopy
KKNKSQAPNLIKLATNMLCMADMDHTIPM/DVCVSKIRSLL/GIPMNNLYVKQADLKWMKNDIFQ*SNC


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide