RetrogeneDB ID:
retro_ecab_434
Organism:
Horse ( Equus_caballus )
Location:
18:48713107-48713410 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.32 %
Coverage:
98.06 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_434
CAATTTGTCCACAGCCTCACTGAGAAGGCTCTGGTGCTGATAAATGCTGCTAAGACTTAC
TCAAAGCTGGGATTAGCCACATTTTGGCATGACCTTAACATTAAGCTTGTCTCTCAAACC
CCTGTTGAGATACCTAGAACTACTTAGAGCCTGAAAAAAATAATCCGTAGTGCTCAAACT
GGTAGCTGCAAATAGCTCACAATTAAGGAAGCTGTGCTGAATGGTTTGGTGGCTGCTGAG
TTGTGGATGTGGTTTTATATTGGTGAGATTATAGGCAAGTGTGGCATCATTGGCTATAAT
GTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QFVRNLAEKAPALVNAAVTYSKPRLATFWHYAKVELVPPTPAEIPTAIQSLKKIVNSAQTGSFKQLSVKEALLNGLVATEVWMWFYVGEIIGKRGIIGYN
QFV..L.EKA..L.NAA.TYSK..LATFWH.....LV..TP.EIP....SLKKI..SAQTGS.K.L..KEA.LNGLVA.E.WMWFY.GEIIGK.GIIGYN
Retrocopy
QFVHSLTEKALVLINAAKTYSKLGLATFWHDLNIKLVSQTPVEIPRTT*SLKKIIRSAQTGSCK*LTIKEAVLNGLVAAELWMWFYIGEIIGKCGIIGYN


Parental protein
V
V
Retrocopy
V


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide