RetrogeneDB ID:
retro_ecab_435
Organism:
Horse ( Equus_caballus )
Location:
18:54515901-54516663 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
73.73 %
Coverage:
96.56 %
Frameshifts:
0
Stop codons:
1
Parental gene:
Parental gene symbol:
RPS4
Parental gene aliases:
No gene alias available
Parental gene description:
40S ribosomal protein S4 [Source:UniProtKB/Swiss-Prot;Acc:P55832]
Genomic region (view in browser)
>retro_ecab_435
GCTCTTGGTCCCAAGAAGCATCTGAAGTATGTAGCAGCTCCAAAGCATTGGATTCTGGAT
AAACAGCCCAGCGTGTTTGCTCCTTGTCCATCTACCGGTGCCCACAAGCTGAGAGAATGT
CTCTTCCTCATCATTTTCCTAAGGAACAGACTTAAGCATGCCCTAACAGGAGATGAAGTA
AAAAATATCTGCATGCAGTGGTTCATTAAGATTGGCAAGGTCCCAACTGATATAACCTAC
CCTGCTGGTTTCATGGATGTCGTCAGCATTGACAAGCCTGTAGAGAACTTCCAGGTGGTC
TATGACAGTGAGGGTGGCCTTGCTGTTCATAGTATCACACCCAAGGAGGCCAAGGTATTG
TACAAGTTGCACAAAGTGAGAAAGATCTTTGTAGGCGTGAAAGGAATTCTTCATCTGGTG
ACCCATGATGCTCACACCATCCACTACCCTGATTGCCTCATCGACGTGAACACCACCATC
CAGACTGATTTGGAGACTGGAAAGATCACCAGCTTCACAAAGTCCGACAGTGCTAACCTG
TGTATGGTGACCAGAGGTGCTAACCTGGGAGGAACGAGTGTGGTCACCAACAGAGACAGA
CAACCTGGTTCTTTTGATGTGGTTCACGTGCAAGATTCCAGTGGCAACAGCTTTCCCACC
TGATTCTGCAACATTTTTGTTATTTGCAAACGCAACAAAACACGGATTTCTCTTCCGCAA
AGAAAAGATATCCACCTCATCATTGCTGAAGAGAGACAGGAG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.02 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.03 |
| SRP021940_testis | 0.36 |
Parental protein coverage
Changes in the retrocopy sequence
