RetrogeneDB ID:
retro_ecab_436
Organism:
Horse ( Equus_caballus )
Location:
18:58321242-58321496 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
74.42 %
Coverage:
75.22 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
EIF1
Parental gene aliases:
No gene alias available
Parental gene description:
eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:3249]

Genomic region (view in browser)





>retro_ecab_436
GATTACATCCATATAAGAATTCAACAGAGAAATGGCGGGAAGACTCTTACTACTGTCCAT
CGGATTATTGATGATTGTGATAAAAGGAAACTAGCGAAGGCATTTAAGGAGAAATTTGTC
GCCATAGGACTGTAACTGAGCATCCAGAATATGGAGAAGTAATTCACCTATAAGGCAACC
AGCACAAGAACATATGCTAGGTCCTGGTAGAGATTGGGCTGGCTGAGGATGACCAGCTGA
ATGTTCATGGGTTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNG-TVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKEDQLKVHGF
DYIHIRIQQRNG.KTLTTV..I.DD.DK.KL.KAFK.KF...G.TV.EHPEYGEVI.L.G.Q.KNIC..LVEIGLA..DQL.VHGF
Retrocopy
DYIHIRIQQRNGGKTLTTVHRIIDDCDKRKLAKAFKEKFVAIG/TVTEHPEYGEVIHL*GNQHKNIC*VLVEIGLAEDDQLNVHGF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide