RetrogeneDB ID:
retro_ecab_438
Organism:
Horse ( Equus_caballus )
Location:
18:76263489-76264320 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
90.25 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
IMPA1
Parental gene aliases:
No gene alias available
Parental gene description:
inositol(myo)-1(or 4)-monophosphatase 1 [Source:HGNC Symbol;Acc:6050]

Genomic region (view in browser)





>retro_ecab_438
ATGGCTGGTCCTTGGCAGGAATGCATGGATTATGCAGTAACACTAGCAAGACAAGCTGGA
GAGGTGGTTCGTGACGCCCTGAAAAATGAAATGAATGTTATGATTAAAAGTTCTCCAACT
GATTTGGTAACTGCTACTGACCAAAAAGTTGAAAAAATGCCTATCTCTTCTATAAAGGAA
AAATACCCTTCTCACAGTTTCATTGGTGAGGAATCTGTGGCAGCTGGGGAAAAAAGTGTC
TTAACCGACAACCCTACATGGATCATTGACCCTATCTATGGGACAACCAGCTTTGTACAT
AGATTTCCTTTTGTAGCTGTTTTGATTGACTTTGTTGTAAATAAAAAGATGGAATTTGGG
GTTGTGTACAGTTGTGTGGAATATAAGATGTACACCGGCAGGAAGGGAAAAGGTGCCTTC
TGTAACAGTCAAAAACTGCAGGTTTCACAACAAGAAGATATTACCAAATCACGCTTGGTG
ACAGAGTTGGGGCCTTCAGGAACACCGGAGACTGTAAGTATTATTCTTTCTAATATGGAA
AAGCTTCTTTGCATTCCCATTCATGGGATCTGAGGGGTTGGGACAGCAGCTGTTAATATG
TGCCTTGTGGCAGCTGGAGCTGTGGATGCGTATTATGAAATGGGAGTTCACTGCTGGGAC
ATGGCAGGAGCTGGCATCATTGTTACCGAAGCTGGTGGAGTACTCATGGATGTAATCGGT
GGTCCATTTGGTTTGATGTCACGAAGAATAATTGCTGCAAGTAGTGAAAGTTTAGCAGAA
AGGCTAGCCAAAGAAATTCAGATATTATCTTTTCAAAGAGACGATGAAGAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MADPWQECMDYAVTLARRAGEVVRDALKNEMNVMIKSSPADLVTATDQKVEKMLISSIKEKYPSHSFIGEESVAAGEKSVLTDNPTWIIDPIDGTTNFVH
MA.PWQECMDYAVTLAR.AGEVVRDALKNEMNVMIKSSP.DLVTATDQKVEKM.ISSIKEKYPSHSFIGEESVAAGEKSVLTDNPTWIIDPI.GTT.FVH
Retrocopy
MAGPWQECMDYAVTLARQAGEVVRDALKNEMNVMIKSSPTDLVTATDQKVEKMPISSIKEKYPSHSFIGEESVAAGEKSVLTDNPTWIIDPIYGTTSFVH


Parental protein
RFPFVAVSIGFVVNKKMEFGVVYSCMEDKMYTGRKGKGAFCNGQKLQVSRQEDITKSLLVTELGSSRTPETVRIVLSNMEKLLCIPIHGIRGVGTAAVNM
RFPFVAV.I.FVVNKKMEFGVVYSC.E.KMYTGRKGKGAFCN.QKLQVS.QEDITKS.LVTELG.S.TPETV.I.LSNMEKLLCIPIHGI.GVGTAAVNM
Retrocopy
RFPFVAVLIDFVVNKKMEFGVVYSCVEYKMYTGRKGKGAFCNSQKLQVSQQEDITKSRLVTELGPSGTPETVSIILSNMEKLLCIPIHGI*GVGTAAVNM


Parental protein
CLVAAGVADAYYEMGIHCWDMAGAGIIVTEAGGVLMDVTGGPFDLMSRRIIAASSKTLAERIAKEIQILPFQRDDED
CLVAAG..DAYYEMG.HCWDMAGAGIIVTEAGGVLMDV.GGPF.LMSRRIIAASS..LAER.AKEIQIL.FQRDDED
Retrocopy
CLVAAGAVDAYYEMGVHCWDMAGAGIIVTEAGGVLMDVIGGPFGLMSRRIIAASSESLAERLAKEIQILSFQRDDED


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide