RetrogeneDB ID:
retro_ecab_44
Organism:
Horse ( Equus_caballus )
Location:
X:52050454-52051270 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.76 %
Coverage:
54.27 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
OTUD6B
Parental gene aliases:
No gene alias available
Parental gene description:
OTU domain containing 6B [Source:HGNC Symbol;Acc:24281]

Genomic region (view in browser)





>retro_ecab_44
ATGGAAGATTCACAGCGGATGGTACGACGCCACTACCGCGAAAAGAAAGAGCTGCAGGCC
CGCATCCAGAGCATGAAGAACTCTGTCCCCAAGAGCGACAAGGAGAGAAGAAAGCAGTTG
CTCCTCGACGTCGCCCGCCTCAAGGCCGAGATGGAGCAGAAGCACCAGCAGGAGCTGGAG
AAGTTCCAAGAGAGTTTTCCCGATGACAGCAACCTCGATTCTGTCACTGAAGATCTTGCC
AAGATGGATCTCGAGAACCAGCCTCCCCGCCTCGCAAAGGCACAAAGAAGGCGCGAACGA
AGGGCGGCCGAGGAGGCAGCGCGCCTGGAGAGGATCGCTGAGGTGGAGGCGGAGCGTCAG
GCCGGCTTCCGCCACGACGACGAGGAAGAGAAGCTCTCCGCCATCCTGGAGGCCAGAAAT
CTGGAGATGAAGGAAATCCCAGCCGACGGCCACTGCATGTACCGCGCCATCCAAGACCAG
CTGGTGTTCCCGGTGACCGTGGAGAGCCTGCGGCGTCGCACCGCCAACTACCTGAGGAAG
CACGTCGACGACTTCCTGCCCTTCTTCAGCGACTCCGAAACCGGCGACACCTGCAGCCGC
GACAGCTTCTTGAGTTACTGCGACGACATCGTGCACAGCGCGTTGTGGGGAGGCCAGCTC
GAGCTGAGGGCCCTGTCGCACGTCCTGCAGACCCCCATCGAGGTGATCCAGGCCTACTCT
CCCGTCCTCGTCATCGGGGAGGAGTACGCCAAGAAGCCGCTCACCCTCGTCTACCTGCGC
TACTCCTGCAGCCTCGGGGAGCACTACAACTCGGTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.1
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 22.49

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LDEEQQLVRRHRKEKKELQAKIQGMKNAVPKNDKKRRKQLTEDISKLEAEMEQKHREELEQLKLT-SKESKIDSVADNISNLVLENQPPRISKARKRRDK
....Q..VRRH..EKKELQA.IQ.MKN.VPK.DK.RRKQL..D...L.AEMEQKH..ELE.........S..DSV........LENQPPR..KA..RR..
Retrocopy
MEDSQRMVRRHYREKKELQARIQSMKNSVPKSDKERRKQLLLDVARLKAEMEQKHQQELEKFQESFPDDSNLDSVTEDLAKMDLENQPPRLAKAQRRRER


Parental protein
KAALEKEREERIAEAEIENLTGARH-VESEKLAQILAARQLEIKQIPSDGHCMYRAIEDQL
.AA.E..R.ERIAE.E.E...G.RH..E.EKL..IL.AR.LE.K.IP.DGHCMYRAI.DQL
Retrocopy
RAAEEAARLERIAEVEAERQAGFRHDDEEEKLSAILEARNLEMKEIPADGHCMYRAIQDQL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide