RetrogeneDB ID:
retro_ecab_441
Organism:
Horse ( Equus_caballus )
Location:
18:4495647-4496084 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
85.71 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_441
GGTTATGTGTGGGTGTTTGAGGAGTACATGCAGGTTATTAGCCAGCGGTACCTAGACATC
CACATTGAAGGGGAGAATTACCTCCCTCAACCAATATATAGATGCATAGCATCTTTCCTG
TCAGTCTTCAAACTAGTAATAATAGGCTTAATAATTGTTGGCAAGGATCCTTTTGCTTTC
TTAGCTATGCAAGCTCCTAGCATCTGGCAGTGGGGCCAAGAAAACAAGATCTATGGGTGT
ATGATGGTCTTCTTCTTGAGCAACATGACTGAGGACCAGTGTGTGTCAACAGGTGCATTT
AGATACCTTTGAATGATGTACCTGTGTGGTCTAAGCTGGAATCTGGTCACCTGTCATCCA
TGCAACAGCTTGTTCAAATTCTTGACAATGAAATGAAGCTCAGTGTGCATATGGATCCAA
TCCCACATCATCGATCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMVENQCMSTGAF
GY..VFEEYM.VISQRY.DI.IEGENYLPQPIYR.IASFLSVFKLV.IGLIIVGKDPFAF..MQAPSIWQWGQENK.Y.CMMVFFLSNM.E.QC.STGAF
Retrocopy
GYVWVFEEYMQVISQRYLDIHIEGENYLPQPIYRCIASFLSVFKLVIIGLIIVGKDPFAFLAMQAPSIWQWGQENKIYGCMMVFFLSNMTEDQCVSTGAF


Parental protein
E-ITFNDVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDPIPHHGS
..I..NDVPVWSKLESGHL.SMQQLVQILDNEMKL.VHMDPIPHH.S
Retrocopy
R/IPLNDVPVWSKLESGHLSSMQQLVQILDNEMKLSVHMDPIPHHRS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide