RetrogeneDB ID:
retro_ecab_442
Organism:
Horse ( Equus_caballus )
Location:
18:10495584-10495911 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.02 %
Coverage:
66.87 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
CFL1
Parental gene aliases:
No gene alias available
Parental gene description:
cofilin 1 (non-muscle) [Source:HGNC Symbol;Acc:1874]

Genomic region (view in browser)





>retro_ecab_442
CTGGTAGGAGATGTGGGCCGGCTGTCGATGACCCCTCCTCTGCCTTTGTCAAGAGGCAGC
TGGACGCGGTCTGCTGCTCCGTGCTCTATGAGGCAACCCAGGAGACCGAGGAGAACAAGA
GGCGGCCCTGCTGTTCATCTTCGGGGCCCCTGAGTCTGCACCCCTTAAGAGCAGATGACG
GATGCCAGCCCCCAGGGACGTCATCAGGAAGCTGACAGGGATCAAGCTAGAATTACGCGC
AAACTGCTCTGAGGTGATCAAGGGCCAGTGCACCGTGCCAGGGAAGCTGGGGGCAGCGCG
GCCACCTCCCTGGAGGGCGAGCCTTTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LVGDVGQ-TVDDPYATFVKMLPDKDCRYALYDATYETKESKKED-LVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVKDRCTLAEKL
LVGDVG...VDDP...FVK...D..C...LY.AT.ET.E.K....L.FIF.APESAPLKS........D.I..KLTGIK.EL.ANC.E..K..CT...KL
Retrocopy
LVGDVGR/AVDDPSSAFVKRQLDAVCCSVLYEATQETEENKRRP/LLFIFGAPESAPLKSR*RMPAPRDVIR-KLTGIKLELRANCSEVIKGQCTVPGKL


Parental protein
-GGSAVISLEGKPL
.GGSA..SLEG.PL
Retrocopy
/GGSAATSLEGEPL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide