RetrogeneDB ID:
retro_ecab_443
Organism:
Horse ( Equus_caballus )
Location:
18:15083315-15083889 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
81.03 %
Coverage:
73.66 %
Frameshifts:
2
Stop codons:
0
Parental gene:
Parental gene symbol:
RPS4
Parental gene aliases:
No gene alias available
Parental gene description:
40S ribosomal protein S4 [Source:UniProtKB/Swiss-Prot;Acc:P55832]
Genomic region (view in browser)
>retro_ecab_443
TTAAAACTTGATGGCAAGGTCCGAACTGATATAACCTATCCTGCTGGTTTTATGGATGTC
ATCAGCATTGACAAGACTGGAGAGAATTTTCATCTATTCTGTGTCACCAAGTGTTGCTTT
GTTCATCATATGACACCTGAGGAGGCCAAGTACAAATTGTGGAAAGTGAGAAAAATCTTT
ATGGGCAAAAAAGGAATGCCTTATCTGGTAACCCATGATGTTTGTGCCATCCGGTACTCT
GATTCTCTCATCAAGGTGAATGACACCATTCAGATTTATTTGGACACTGGTAAGATTACT
GATTTCATCAAATTTGACACTGGTAACCTGTGTATGGTGACCAGAGGTGCTAATCTGGGA
AAAATTGGTGTGATCACCAACAGAGAGCTAGGCCCTGGTTCTTTCGATGTGGTTCATATG
AAGATGCTAACGGCAACAGCTTTGCCAGCCAGCACTCTAACATTTTTGTTTTTGGCAAAG
GCAACAAACCATGGATTTCTCTTCCCCGTGGAAAGGGATCCACCTCACCATTGCTGAAGA
AAGAAACAAGAGACTGGCAGCCAAACAGAGGAGT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.06 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.07 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.0 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
