RetrogeneDB ID:
retro_ecab_444
Organism:
Horse ( Equus_caballus )
Location:
18:19662901-19663286 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
79.84 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
CDV3
Parental gene aliases:
No gene alias available
Parental gene description:
CDV3 homolog (mouse) [Source:HGNC Symbol;Acc:26928]

Genomic region (view in browser)





>retro_ecab_444
GGTGGTGGTGTAGAAAAATCTTCAGGTCCCTGCAATAAAACAGCTCCGGGGCAAGCACCT
CTTGCTCCAGGAACTGTTACAGAAACCCCCAATCCGGCAATGACTAGTGATCTGTATAGG
CCTCCCGGGGCGAGATTAACCACAACAAGGGAAAAAACACAAGGACCACCAGAAATAGAC
AGCGACACACAGTTCCCATCCCTGCAACCCACTGCCAAGCATGTGGGGAGCCGGAAGGAT
AAAGAGATGGAGAAGAGCTCTGAAAGTAGTCAGACACGGAATGAGACATAGGGATGAGCT
TTCAAAAAGCCAGGCCCTTAAACTGCAGCTAGACAACCGATGTGCTGTGCTGGAAGGTCA
GAGAAGCAGCCGCGCACAGTCCAGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.12
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GGGVEKSSGPWNKTAPVQAPPAPGIVTETPEPAMTSGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVESRKDKGMQKSFE-VVRHRTRRRDE
GGGVEKSSGP.NKTAP.QAP.APG.VTETP.PAMTS..YRPPGARLTTTR...QGPPEI.SDTQFPSLQ.TAKHV.SRKDK.M.KS.E.VVRH..R.RDE
Retrocopy
GGGVEKSSGPCNKTAPGQAPLAPGTVTETPNPAMTSDLYRPPGARLTTTREKTQGPPEIDSDTQFPSLQPTAKHVGSRKDKEMEKSSE\VVRHGMRHRDE


Parental protein
VSGSQAPTLQLDNRCAVLGGQRSSCAQSS
.S.SQA..LQLDNRCAVL.GQRSS.AQSS
Retrocopy
LSKSQALKLQLDNRCAVLEGQRSSRAQSS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide