RetrogeneDB ID:
retro_ecab_446
Organism:
Horse ( Equus_caballus )
Location:
18:42291811-42292223 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
73.05 %
Coverage:
74.33 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
RPE
Parental gene aliases:
No gene alias available
Parental gene description:
ribulose-5-phosphate-3-epimerase [Source:HGNC Symbol;Acc:10293]

Genomic region (view in browser)





>retro_ecab_446
AGTCTCCAAAAGCAGCTAGACCAGGATCCTTTCTTTAACACGCATGGGATGGTGTCCAGG
CTGGAACAGTGAGTAAAGCTTGTGGACGCAGTAGGAGCCAATCAATATGCCTTTCATCCT
GAGGATACTAAGAACCCAGAGGCTTTGATTAAAGATATTTGGGAGAATAGGATGAAGACT
GGACTTGCCATCAAATTAGGAACTACGGTTGAGTATTTGGCACCATGGGCTAATGTAGAT
ATGGCCTTGGTAATGCCAGTAGAACCTGGGTTTGGAGGGCAGAAATTTATGAAAGTTATG
CTGCCAAAGGTTCATTGATTGAGGACCAGTTCCCTTCTTTAGACATAGAGGTCAATGGTG
AAGTGGGTCACGACACTATCCATAACTGAGCAAACACGTGGCTAACATGATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.07
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SLRKQLGQDPFFDMHMMVSRPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTTVEYLAPWANQIDMALVMTVEPGFGGQKFMED
SL.KQL.QDPFF..H.MVSR.EQ.VK.....GANQY.FH.E.T.NP.ALIKDI.EN.MK.GLAIK.GTTVEYLAPWAN..DMALVM.VEPGFGGQKFM..
Retrocopy
SLQKQLDQDPFFNTHGMVSRLEQ*VKLVDAVGANQYAFHPEDTKNPEALIKDIWENRMKTGLAIKLGTTVEYLAPWAN-VDMALVMPVEPGFGGQKFMKV


Parental protein
MMPKVHWLRT-QFPSLDIEVDGGVGPDTIHKCAEAG-ANMI
M.PKVH.LRT.QFPSLDIEV.G.VG.DTIH..A....ANMI
Retrocopy
MLPKVH*LRT/QFPSLDIEVNGEVGHDTIHN*ANTW/ANMI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide