RetrogeneDB ID:
retro_ecab_447
Organism:
Horse ( Equus_caballus )
Location:
18:46544488-46545646 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.81 %
Coverage:
100.0 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_447
GTGATAAAGTATCACTTTCAACACTGGGAATTTTCATTAACATTGACAGATGATATTTAC
AGTTGCTACCAATCCTTCAACAACCAGAGTGATTCGGAAAAGGAGATGCAGAAAATGAAT
CCACACAAGATTGATATAAGCGCAGTATATTCCCACAGGCTCAATCAACACAATACAGTG
AAGCTGGGAACTTTCCAGGCTCAGGAAAAAGAATTAGTGTTTGACATGGACATGACAGAC
TAGACGATGTGAGGAGATGTTGTAGTTCTGCAGGCATATATTCTGAGTGCTGGACCCTCA
TGAAGATGGCCATAATTATCATCCACCAGACATTGACAGAGGACAGGAGATTTAAGCGTC
ATCTCTGGGTATATTCTAGAAGGAGAGGCGTTCATCGTTGAGTCTGTGATGAATCAGTTA
GAAAATTGTTCCCAGTACGTTCTGGGATAGATGAGTATTTGAGTCTTGTAAAGGGTGGTC
AAGAGGTCAAAAAGACAGTTTGTCTAAGTGAAAAAATTTACCCTTTTGTTAGGAAATATA
AACATAATAAAAGACTGCTTTGAAGAATATGCCTTGGTTGATCAAGATATTCTTGAAAAT
AAAGAAAGATGGGATAGGATGTTAGCCCTTCTTCCTAGAGTAATTCATGATTGCTTCCAA
AAACTTCAACAAGGCTTCCAAAAGCATTACAATCCACTTCAGGATTGGCAGCATTTGAAG
AGGGTAGCCAGCAGATGTGAGAATAACATCAAAAAAGACAAATGTCGATCCTGGCTTGAG
TGGGAGATCATGCTCTGGTACTGTTTTCCACAGCTGGATATTAATGTTAGCAAAGGAATC
AGTCATTTACTGAAAAGTCCTTTTAGTGTTCGTCCTAAAACAGGTTGCATTTTTGTGCCT
ATTGATTTACAGAGAGTAGATCGATTTGATCCATTTACTGTTCCAGCCATAGGTTCCATC
TACCATGAAGTGGATAGCATTTCCACTAATGAAGAGAAAAAAGAGGAGAACGAAGTTGAA
TCTGATATCAAACATAGAATCAGAGACTATAAGAAGACCAATCTAACTCCTTATGTAAAA
GCTTTTGAACAGTTTCTTGAAAACCTGGATAAATCCCAAAAAAAGGAGTTCTCAAGAAGT
GATTTACAAAACGATTTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VVKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTD-YDDVRRCCSSADICSKCWT
V.K..FQH.EFS.TL.DDIY..YQSFNNQSD.EKEMQKMNP.KIDI.AVYSHR.NQHNTVKLG.FQAQEKELVFD.DMTD..DDVRRCCSSA.I.S.CWT
Retrocopy
VIKYHFQHWEFSLTLTDDIYSCYQSFNNQSDSEKEMQKMNPHKIDISAVYSHRLNQHNTVKLGTFQAQEKELVFDMDMTD/LDDVRRCCSSAGIYSECWT


Parental protein
LMTMAIRIIDRALKGKDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQDVKKKVHLSENVH-PF-VRKSISIIKKYFEGYALVG
LM.MAI.II...L...D..FK..LWVYS.RRGVH..VCDESVRKL...VRSGI.EYLSLVKGGQ.VKK.V.LSE....PF.....I.IIK..FE.YALV.
Retrocopy
LMKMAIIIIHQTLT-EDRRFKRHLWVYSRRRGVHR*VCDESVRKLFP-VRSGIDEYLSLVKGGQEVKKTVCLSEKIY/PF/LLGNINIIKDCFEEYALVD


Parental protein
QDILENKESWDKILALVYPSPMHN---DLQQNFQKHHSSLQRWEYLKKAASQCPSNIKNEKCGPWLEWEIMLQYCFPRLDINVSKGINHLLKSPFSVHPK
QDILENKE.WD..LAL..P...H.....LQQ.FQKH...LQ.W..LK..AS.C..NIK..KC..WLEWEIML.YCFP.LDINVSKGI.HLLKSPFSV.PK
Retrocopy
QDILENKERWDRMLALL-PRVIHDCFQKLQQGFQKHYNPLQDWQHLKRVASRCENNIKKDKCRSWLEWEIMLWYCFPQLDINVSKGISHLLKSPFSVRPK


Parental protein
TGRISVPIDLQKVDQFDPFAVPTISSICHELDAIFTSEAEKEENQAESDIKHRTRDYKKTSLAPYVKVFEQFLENLDKSRKGELLKKSDLQKDF
TG.I.VPIDLQ.VD.FDPF.VP.I.SI.HE.D.I.T.E..KEEN..ESDIKHR.RDYKKT.L.PYVK.FEQFLENLDKS.K.E....SDLQ.DF
Retrocopy
TGCIFVPIDLQRVDRFDPFTVPAIGSIYHEVDSISTNEEKKEENEVESDIKHRIRDYKKTNLTPYVKAFEQFLENLDKSQKKE-FSRSDLQNDF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide