RetrogeneDB ID:
retro_ecab_448
Organism:
Horse ( Equus_caballus )
Location:
18:50200633-50200941 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.15 %
Coverage:
82.4 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
RPL31
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L31 [Source:HGNC Symbol;Acc:10334]

Genomic region (view in browser)





>retro_ecab_448
GGTGGCAAGAAGAAGGGCCATTCTGCCTTCAACGAGCTAGTGACGACAGAATACACCATC
AATATTCACAAGCCATCCATGGAGTGGGCTTCAAGAAGTGTGCCCCTCGGGTGCTCACAG
AGATTTAGAAATTTGCTATAAAGGAGATGGGAACTCTGGATGTGTGCATTGCCACCAGGC
TCAACAAAGCTGCCTGGGCCAAAGGAATGAGGAATGTCTCATACAGTATCCGTATATGCT
TATCAAGAAAACGTACTGAGGATGAAGACTCACCAGACAAGCGTTGGTTACTTATGTACC
TGTCACCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GEKKKGRSAINEVVTREYTINIHK-RIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLV
G.KKKG.SA.NE.VT.EYTINIHK..IHGVGFKK.APR.L.EI.KFA.KEMGT.DV.I.TRLNKA.WAKG.RNV.Y.IR..LSRKR.EDEDSP.K...L.
Retrocopy
GGKKKGHSAFNELVTTEYTINIHK/AIHGVGFKKCAPRVLTEI*KFAIKEMGTLDVCIATRLNKAAWAKGMRNVSYSIRICLSRKRTEDEDSPDKRWLLM


Parental protein
TYVP
...P
Retrocopy
YLSP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide