RetrogeneDB ID:
retro_ecab_450
Organism:
Horse ( Equus_caballus )
Location:
18:55206524-55207232 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.88 %
Coverage:
53.27 %
Frameshifts:
0
Stop codons:
3


Parental gene:
Parental gene symbol:
FUCA1
Parental gene aliases:
No gene alias available
Parental gene description:
fucosidase, alpha-L- 1, tissue [Source:HGNC Symbol;Acc:4006]

Genomic region (view in browser)





>retro_ecab_450
GTTGATGAGTTGGGAACAGCTGTTCAGAAGAGGAACATATGCTATGGACTCTATCATTCA
TTCTTAGAATGGTTCCATCCACTCTACCTACTTGATAAGAAAAATGGCTTTGAAACATAG
CATTTTGTCAGTGTGAACACAATGCCAGAGTTATATGACATTGTTAACAGGTACAAATCT
GACCTGATTTGGTCTAATGGAGAGTGGAAATGTCCTGATACTTAGCAGAAGTCTACAAAT
TTTCTTTCTTGGCTTTACAATGATAGCTCTGTCAAGGATGAGGTGGTAGTAAATGACTAA
TGGGACCAGAAATGTTCCTGTTACCCTGGAGGATACTACAACTGTCAAGATAAATGCAAG
CCAGAGAGGTTGCTAGATCACAAGTTGGAGACATGTACCACTGTTGACAAGTCATCCTGG
GGCTATCATGGGGACATGGCCATGCCTGACATTGCAAATGAATCTGAAATCATTTCAGAA
CTCGTTCAGACAGTAAGTTTGGGAGGTAACTATCTTCTTAACATTGAACCAACTAAAGAT
GGACTGATTGTTCCCATCTTCCAAGAAAGGCTTTTTGCTGTTGGGAAACGGCTGAACATC
ACTGGGGAGGTTATTTATGCATCTAAACCATCAAGGGTACAATCAGAGAAGAATGTGATA
TCTATATGGTATATCTCAAAAGGATCAGGAGTCTTAACCTTCAGTCTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VGELGAAIRKRNIRYGLYHSLLEWFHPLYLLDKKNGFKTQHFVSAKTMPELYDLVNRYKPDLIWSDGDWESPDTYWNATYFLSWLYNDSPVKDVVVVNDR
V.ELG.A..KRNI.YGLYHS.LEWFHPLYLLDKKNGF.T.HFVS..TMPELYD.VNRYK.DLIWS.G.W..PDT....T.FLSWLYNDS.VKD.VVVND.
Retrocopy
VDELGTAVQKRNICYGLYHSFLEWFHPLYLLDKKNGFET*HFVSVNTMPELYDIVNRYKSDLIWSNGEWKCPDT*QKSTNFLSWLYNDSSVKDEVVVND*


Parental protein
WGQNCSCHHGGYYNCQDKFKPKSLPDHKWEMCTSIDKYSWGYRRDMVMSDITTEFEIISELIQTVSLGGNYLLNVGPTKDGLIVPIFQERLLAVGKWLSI
W.Q.CSC..GGYYNCQDK.KP..L.DHK.E.CT..DK.SWGY..DM.M.DI..E.EIISEL.QTVSLGGNYLLN..PTKDGLIVPIFQERL.AVGK.L.I
Retrocopy
WDQKCSCYPGGYYNCQDKCKPERLLDHKLETCTTVDKSSWGYHGDMAMPDIANESEIISELVQTVSLGGNYLLNIEPTKDGLIVPIFQERLFAVGKRLNI


Parental protein
NGEAIYASKPWRVQLENNMTSVWYTSKGSTVYAIFL
.GE.IYASKP.RVQ.E.N..S.WY.SKGS.V....L
Retrocopy
TGEVIYASKPSRVQSEKNVISIWYISKGSGVLTFSL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide