RetrogeneDB ID:
retro_ecab_451
Organism:
Horse ( Equus_caballus )
Location:
18:63388175-63388530 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.31 %
Coverage:
96.0 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
RPL31
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L31 [Source:HGNC Symbol;Acc:10334]

Genomic region (view in browser)





>retro_ecab_451
CTGGCTTGGGCAAAGGAGGGTGGCGAGAAGAAGGGCCATTCTGCCGTCAAGGAGGTGGTG
ACCAGAGAATCACCATCACCATGTACAAGGGCATCCATGGAGTGGGCTCCGAGAAGCGTG
CCCTTCGGGCACTCTGAGAAATCCAGAAATTTGCCCTGAAGGAGATGGGAACTCCAGCTG
TGCGCTTTGACACCAGGCTGGACAAAGCTGTCTGGGCTAAAGGAATAAGGACTGTCCTCT
ACTGTATCACGTGCAGTTGTCCAGACAACATAATGAGGATGAAGATTCTGCAAACAAGCT
CTACACATTGGTTACCTGTGTACCTGTCACCAGTGTCAAAAATCTACAGTCAGTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAPAKKGGEKKKGRSAINEVVTRE-YTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRI-RVRLSRKRNEDEDS
.A.AK.GGEKK.G.SA..EVVTRE..TI...K.IHGVG..KRA.RAL.EI.KFA.KEMGTP.VR.DTRL.KAVWAKGIR.V.Y.I..V.LSR..NEDEDS
Retrocopy
LAWAKEGGEKK-GHSAVKEVVTRE/ITITMYKGIHGVGSEKRALRAL*EIQKFALKEMGTPAVRFDTRLDKAVWAKGIRTVLYCI/HVQLSRQHNEDEDS


Parental protein
PNKLYTLVTYVPVTTFKNLQTV
.NKLYTLVT.VPVT..KNLQ.V
Retrocopy
ANKLYTLVTCVPVTSVKNLQSV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide