RetrogeneDB ID:
retro_ecab_452
Organism:
Horse ( Equus_caballus )
Location:
18:63507499-63507965 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.13 %
Coverage:
52.96 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
TRNAU1AP
Parental gene aliases:
No gene alias available
Parental gene description:
tRNA selenocysteine 1 associated protein 1 [Source:HGNC Symbol;Acc:30813]

Genomic region (view in browser)





>retro_ecab_452
ATGGAGGCCCGCCTACGGATAGGTGCCCTGGAGCCTACGTGGATGAGAACTTCACTGCCA
GAGCCCTTGCCTCCACAGGGGAGACCAGGATAAGTGTCAAAATTACCCAAAACAGCCTCA
CTGGACTCCCAGCTGGCTGCTGTTTTGTAGAATGCACAGATTTGGCAACAGCTGGGAAGT
GTTTGCATAAAATTAATGGGAAACATCATCTAAGAGCCACACCTGCAAAATGTTTTAAAG
TGAACTATGCCACTTGTAGGAAATAACCAAATAATAGCCCTGAGTACTGCCTCTTTTGGG
GGAGGGTCTGATCCAAGATGTGGATGATGGCAAGCTTTTAGAATTCTTCATCTACATCTG
CCGCTCCTGTCAGGAAAGCAAGGTGGTTTTGGATGAGGGCTATGGTTTTGTGAAACCATT
GGGCTATGGTTTTGTCAAATTCACGGATGAATTCACAGATGAAAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAASLWMGDLEP-YMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLF
M.A.L..G.LEP.Y.DENF..RA.A..GET..SVKI..N.LTG.PAG.CFVE..DLATA.KCLHKINGK....ATPAK.FK.NYAT..K.P.NSPEY.LF
Retrocopy
MEARLRIGALEP/YVDENFTARALASTGETRISVKITQNSLTGLPAGCCFVECTDLATAGKCLHKINGKHHLRATPAKCFKVNYATCRK*PNNSPEYCLF


Parental protein
-VGD-LTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYG--FVKFTDELEQKR
..G..L..DVDDG.L.EFF.....SC...KVVLD...G..K..G..FVKFTDE.....
Retrocopy
/LGEGLIQDVDDGKLLEFFIYICRSCQESKVVLDEGYGFVKPLGYGFVKFTDEFTDEK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide