RetrogeneDB ID:
retro_ecab_453
Organism:
Horse ( Equus_caballus )
Location:
18:63810121-63810679 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.63 %
Coverage:
63.73 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
RPSA
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_453
GCCCTTGATGTCCTGAAAATGAAGGAGGAGGATGTCTTCAAATTCCCTGCAGCAAGAACC
CACTTAGGTGGCACCAACCTTGATTTGCAAATGGAATAATTATCTACAAAAAGAAAAGTG
ATGACCTTACCTCAGAAATCTGAAGAGAACCTGGGAGAAGCATCTGCTGGCAGCTCACAC
CATTGTTGCTGTTGAAAACTCAGCTGACGTCAGTATCATATCATCCAGGAATACTGGCCA
GCAAGCCGTGCTGAAGTTGGCTGCTGCCCCTGGAGCCAGTACTACTGGGGCCTCTTCATT
CCTGGAACCTTCACTAACCAGATCCAAGCAGCCTTCCAGGAGCCATGACTTCCGGTGGCT
ACTGATTCCAGGGCTAACCACCAGCCTCTCACAGAGGCATCCTATGTTAACTCAACTATC
ATGGGTCTGTGTAAGACAGACTTTTCTCTTCTCTGTGTGGACACTGCCATCCCATGAAAC
AAGGAAGCTCACTCAGTGGGTCAGATGTGGTGGACACTGGCTGAGGAAGTCCTGTGCATA
CATGGCACCGTCTCCCAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ALDVLQMKEEDVLKFLAAGTHLGGTNLDFQME-QYIYKRKSDGI-YIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIA-
ALDVL.MKEEDV.KF.AA.THLGGTNLD.QME...IYK.KSD...Y..NLKRTWEK.LLAA..IVA.EN.ADVS.ISSRNTGQ.AVLK.AAA.GA.....
Retrocopy
ALDVLKMKEEDVFKFPAARTHLGGTNLDLQME/IIIYKKKSDDL/YLRNLKRTWEKHLLAAHTIVAVENSADVSIISSRNTGQQAVLKLAAAPGASTTG/


Parental protein
GRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISR
G.F.PGTFTNQIQAAF.EP.L.V.TD.RA.HQPLTEASYVN.....LC.TD..L..VD.AIP..NK.AHSVG.MWW.LA.EVL...GT.S.
Retrocopy
GLFIPGTFTNQIQAAFQEP*LPVATDSRANHQPLTEASYVNSTIMGLCKTDFSLLCVDTAIP-*NKEAHSVGQMWWTLAEEVLCIHGTVSQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide