RetrogeneDB ID:
retro_ecab_455
Organism:
Horse ( Equus_caballus )
Location:
18:76774820-76775270 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
77.07 %
Coverage:
80.73 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
SEC11C
Parental gene aliases:
No gene alias available
Parental gene description:
SEC11 homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:23400]

Genomic region (view in browser)





>retro_ecab_455
ATGGGGAAGCATCTCCCTGTGTCCGGTTTGGACCTCTGTGGGGACCTGAGAAAGTGGAAC
AAGTGTCAGCTCTTCTACCAGGTTTGAAACTTTGCCATGATTGTGTCTTCTGCATTCATG
ATCTGGAAAAGCTCGATTGTCCTCACTGGCAGCAAGAGCCCGATCACAGTGGTGCTGAGT
GGACCCAGCCTTTCATAGGGTGACTTTCTGTTCCTAACAAATTTCCAGGAAGACCCTAAT
TAGAGCTGGTGAGATTGTTGTTTTTAAAGTTGAAGGACAAGACATTCCAGTAGTTCACAG
AGTAATCAAAGTTCATGAAAAAGATAATGGAGACATCAAATTTCTGACTAAAGGAGATAA
TAATGAAGTTGATGGTAGAGGCTTTACAAAGACCAGGACTCGCTCAAAAAGGACCTGGTG
GGAAGAGCCAGAGGGTTTTTACCATATGTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VGTHLPASGLDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLFLTNFREDP-IRAGEIVVFKVEGRDIP
.G.HLP.SGLD..GDLRK.NK.QL.YQV.NFAMIVSSA.MIWK..IVLTGS.SPI.VVLSG...P....GD.LFLTNF.EDP.IRAGEIVVFKVEG.DIP
Retrocopy
MGKHLPVSGLDLCGDLRKWNKCQLFYQV*NFAMIVSSAFMIWKSSIVLTGSKSPITVVLSG---PSLS*GDFLFLTNFQEDP\IRAGEIVVFKVEGQDIP


Parental protein
IVHRVIKVHEKDNGDIKFLTKGDNNEVDDRG-LYKEGQNWLEKKDVVGRARGFLPYV
.VHRVIKVHEKDNGDIKFLTKGDNNEVD.RG.LYK.......KKD.VGRARGFLPYV
Retrocopy
VVHRVIKVHEKDNGDIKFLTKGDNNEVDGRG/LYKDQDSL--KKDLVGRARGFLPYV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide