RetrogeneDB ID:
retro_ecab_456
Organism:
Horse ( Equus_caballus )
Location:
19:5739142-5739674 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
56.45 %
Coverage:
94.87 %
Frameshifts:
1
Stop codons:
6


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_456
CTCGGGCTTCAGAAGAGGCTGGCCTCCAGTGTCCTCTGCTGTGGAAAAAAGATCTGGTTG
TACCCCAACGAGGCCAGTGAAATCTCCATTGCCAGCTCCCATCAGCAGGTCCAGAAGCTG
CATCAGTGATGGGCTGATCATCAAGAAGCCTGTGACTGATCACTCCTAGGCTTGATGCTA
GAAAACCACCTTGTCCCACTGGTAGGGCAGGCATATGGGGACAGGTAGGCTTTCCAATGC
TGGAATGCCCAACAAGGTAACCTGGATGAGGAGGATAAGAATTTTGCTCCTGCTGCTCAG
AAACCGTGAATCTAAGAAGATTGACATGTACACAGCCTGTACCTGAAAGTGAAGAGAGAT
ATTTTCAAAAACACAGGTTCTCGTGGAACACATCCACAAACTGAAGGCAGACAAGCCTCC
CGAGAAGCTCCTGGCTGACCAAGCTGAGGGCCACAGGTCTAAGAACAAGGAAGTTTGCAA
ATGCAGTAAAGAGCTGCTCCAGATCAAGAAGGAGGAAGTCATTAAGACTGTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKL-IKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRIL
L.LQKRLASSVL.CGKK..WL.PNE..EI..A.S.QQ..KL.I.DGLII.KPVT.HS.A.C.K.TL....GRHMG.G......NA.MP.KVTWMRR....
Retrocopy
LGLQKRLASSVLCCGKK-IWLYPNEASEISIASSHQQVQKL\ISDGLIIKKPVTDHS*A*C*KTTLSHW*GRHMGTGR---LSNAGMPNKVTWMRR---I


Parental protein
RRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTL
R.LL...R........MY.....K.....F.....L.EHIHKLKADK...KLLADQAE..RSK.KE..K...E.LQ.KKEE.IKT.
Retrocopy
RILLLLLRNRESKKIDMYTACT*K*R-EIFSKTQVLVEHIHKLKADKPPEKLLADQAEGHRSKNKEVCKCSKELLQIKKEEVIKTV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide