RetrogeneDB ID:
retro_ecab_457
Organism:
Horse ( Equus_caballus )
Location:
19:7559665-7559976 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.55 %
Coverage:
63.64 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_457
CAACTGACCATTCAGAACAGACAGGCCCAGATTGAGATGGTACTTCTCCCTCTACCACGA
TCCTCAAAGCCCTCAAGGAATCACCCAGAGACAGAAAGAAGCAAAAAAGTTAAGCACAGT
GAAATATCACTTTTGATGAGATTGTCAATATTGCCCGATTGATACCTCACTGATTCTTAG
CCAGAGAACTCTCTGGAACCAGTAAAAAGATTTTGAGGACTGCCCGCTCTGTGGACTGCA
AGCTTGATGGTCACCACCCTCATGACATCAGAGATGGTGTGAACAGTGGTGCAGCAGAAT
ACCCAGCTAGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSG-NITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDVIDDINNGA
.LTIQNRQAQIE.V........K.....P......K..KHS..NITFDEIVNIAR...H..LARELSGT.K.IL.TA.SV.C..DG.HPHD..D..N.GA
Retrocopy
QLTIQNRQAQIEMVLLPLPRSSKPSRNHP-ETERSKKVKHSE/NITFDEIVNIARLIPH*FLARELSGTSKKILRTARSVDCKLDGHHPHDIRDGVNSGA


Parental protein
VECPAS
.E.PAS
Retrocopy
AEYPAS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide