RetrogeneDB ID:
retro_ecab_458
Organism:
Horse ( Equus_caballus )
Location:
19:10781931-10782326 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
78.1 %
Coverage:
94.44 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
CCDC58
Parental gene aliases:
No gene alias available
Parental gene description:
coiled-coil domain containing 58 [Source:HGNC Symbol;Acc:31136]

Genomic region (view in browser)





>retro_ecab_458
GTGAACTGTGAGTTCGCCAAGTTCCAGGAATTACTCAAGGTGATGAGGATGATTGAGGAG
AGAATAGTATGCGTATTAAACACTACAGTTCCAACAAATTCACTTGCAGGGAAATTCACG
CCAGTGAAACCTGTAAACAACTTTATGAGTCTTTGATGGCAGCTCGTGCAAGTAGGAGTA
GAGTCATAAAAAACCATATAGCTCAGACCTCATCAGTAGTAAAAATCCTCCGAGAAAAGA
ATTTGGACTATTTAACATTATTAAAGCAACTTTGAAAAGAACAGACAAAGTTGGAACTGA
TGCAGTCAGAACTGAATGTTGAAGAAGTGGTAAATGATAAGAGCTGGAAGGTGTGTAATG
AATGCTGCCAAATTCACGTCAAACCTCCAAAGAAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VNCEEFAEFQELLKVMRTIDDRIVHELNTTVPTASFAGK-IDASQTCKQLYESLMEAHASRDRVIKNCIAQTSAVVKHLREEREKNLDDLTLLKQLRKEQ
VNCE.FA.FQELLKVMR.I..RIV..LNTTVPT.S.AGK.I.AS.TCKQLYESLM.A.ASR.RVIKN.IAQTS.VVK.L...REKNLD.LTLLKQL.KEQ
Retrocopy
VNCE-FAKFQELLKVMRMIEERIVCVLNTTVPTNSLAGK/IHASETCKQLYESLMAARASRSRVIKNHIAQTSSVVKIL---REKNLDYLTLLKQL*KEQ


Parental protein
TKLKWMQSELNVEEVVNDRSWKVFNERCRIHFKPPKN
TKL..MQSELNVEEVVND.SWKV.NE.C.IH.KPPKN
Retrocopy
TKLELMQSELNVEEVVNDKSWKVCNECCQIHVKPPKN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide