RetrogeneDB ID:
retro_ecab_462
Organism:
Horse ( Equus_caballus )
Location:
19:28877769-28878164 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.7 %
Coverage:
94.85 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_462
CTCGTCCTTCGGGCCCTGGTAGGTGGGGCACAGGGGCTTCACCTCTAAGGCAGATCTTCA
GAGAAGTGTCTAGATCACAGATGAGGTGATCCAGCACCTGGAGCATCTAGCTTTTGTGGA
CTTTGGCAGGAAAGAGGCTAAGGTGTATCTGGAGAAAGCCATCACCTTTGCCAACCTACT
CCATGCTGTGGACATGAAGGGGTGGAGCCCATGGAGCCAGTATTGGGGGACAGATGTCTA
TTCTTGAGATCCAGCATGTGGTAGAAAGCAATTGTTCTCAGGACCTACTACAAACTTCCA
TTCAGCTATGGAGGAGTATTTTGTGCTCCCCTCACCCGGCTCCCGGTAATATCTCTTTGC
CAAAGCTGGATGAACAAGAGCCCTTCTCACATGGC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LGLRALVGG-RRGFTCKADTKGSGRITAEVIEHLERLALVDFGSQEAVARLEKAIAFADRLRAVDT-DGVEPMESVLEDRCLYLRSD-HVIEGNCAEELL
L.LRALVGG..RGFT.KAD...S..IT.EVI.HLE.LA.VDFG..EA...LEKAI.FA..L.AVD...GVEPME.VL.DRCL.LRS..HV.E.NC...LL
Retrocopy
LVLRALVGG\HRGFTSKADLQRSV*ITDEVIQHLEHLAFVDFGRKEAKVYLEKAITFANLLHAVDM/EGVEPMEPVLGDRCLFLRSS/HVVESNCSQDLL


Parental protein
QNSHRVVEEYFVAP---PGNISLPKLDEQEPFSHG
Q.S..........P...PGNISLPKLDEQEPFSHG
Retrocopy
QTSIQLWRSILCSPHPAPGNISLPKLDEQEPFSHG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide