RetrogeneDB ID:
retro_ecab_464
Organism:
Horse ( Equus_caballus )
Location:
19:52761223-52761655 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
78.77 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_464
ATGCCCAAGAATAAAGGTAAAAGAGGTAAATTAGATGCAGAGGTAAGAATGAGAATTCAT
CTAAAGAAAAGAGAGCTGGCGCTCAAAGAGGATGGACAAGAGTATGCTCAAGTAATGAAA
ATGTTGGGAAATGGATGATTAGAAGTGAGGTGTTTTGATGGCATAAATAGGTTAGGTCAC
ATGAGAGGGAAATTGAGGAAAAAGCTTTGGATAAATACCTCAGATCTTATATTGGTTGCT
CTATGAGACTAACAGGATAACAAAGCTGGTGTAATTTTAAAACCCAATCAGGATGAAGCT
ATAAGTGTGAAGGCCTATGGTGAGCTTCCAGAACATGCTAAATTTAAGGAAACTGATACA
TTTGGTCCTGGAGATGATGATGGAATTCAGTTTGATGATATTGGAAATGATGAAGAAGAC
ATTGATGATATC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MPKNKGKGGKN-RRRGKNENESE-KRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNAD
MPKNKGK.GK..R.RGKNEN.S..KREL..KEDGQEYAQV.KMLGNG.LE..CFDGI.RL.H.RGKLRKK.WINTSD.ILV.L.D.QDNKA.VILK.N.D
Retrocopy
MPKNKGKRGKL/RCRGKNENSSK\KRELALKEDGQEYAQVMKMLGNG*LEVRCFDGINRLGHMRGKLRKKLWINTSDLILVAL*D*QDNKAGVILKPNQD


Parental protein
EARSLKAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDIDDI
EA.S.KAYGELPEHAK..ETDTFGPGDDD.IQFDDIG.D.EDIDDI
Retrocopy
EAISVKAYGELPEHAKFKETDTFGPGDDDGIQFDDIGNDEEDIDDI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide