RetrogeneDB ID:
retro_ecab_466
Organism:
Horse ( Equus_caballus )
Location:
19:57370861-57371253 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
64.71 %
Coverage:
82.82 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
SKP1
Parental gene aliases:
No gene alias available
Parental gene description:
S-phase kinase-associated protein 1 [Source:HGNC Symbol;Acc:10899]

Genomic region (view in browser)





>retro_ecab_466
AAGACCATGTCGGAAGATTTGGGAATGGATGATAGAGATGATGGCCCACTTCCTCTACCG
CATGTCAATTCAGTGATATTAACAAAGGTCAGTCGGTGGTGCTCCCACCACCAGCATGAC
CCTCCTCCCGAGGACAATGAGAACAAAGAAAGAGGAACAGATGATGTCCTCTTTGGGACT
AAGAATTCCTGGAAGTTGACCAAGGAACACGTTTTGAACTTATTCTGGCTGCAAACTCCT
TAGACACCAAAGATTTGCTTGGCGTTACATGCAAGACTGTTTCCAATACAGTTGAGCAGA
AAACTCATGAGATTCGTGAGACTTTCAAAATCGAGAATGACTTTCCGAAGAAGAGGGAGC
CGAGGTGCAAGGACAACGAGTGGTGTGAAGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDI-PVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANM
KTM.EDLGMDD..DD.P.PLP.VN..IL.KV..WC.HH..DPPP.ED.ENKE..TDD..P.WD.EFL.VDQGT.FELILAAN.LD.K.LL.VTCKTV.N.
Retrocopy
KTMSEDLGMDDR-DDGPLPLPHVNSVILTKVSRWCSHHQHDPPP-EDNENKERGTDDV/PLWD*EFLEVDQGTRFELILAANSLDTKDLLGVTCKTVSNT


Parental protein
IKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE
...KT..EIR.TF.I.NDF....E....K.N.WCEE
Retrocopy
VEQKT-HEIRETFKIENDFPKKREPRC-KDNEWCEE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide